ENSMUSG00000035215


Mus musculus

Features
Gene ID: ENSMUSG00000035215
  
Biological name :Lsm7
  
Synonyms : Lsm7 / Mus musculus LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated (Lsm7), transcript variant 3, mRNA. / Q9CQQ8
  
Possible biological names infered from orthology : LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated / Q9UK45
  
Species: Mus musculus
  
Chr. number: 10
Strand: -1
Band: C1
Gene start: 80852821
Gene end: 80855209
  
Corresponding Affymetrix probe sets: 10364373 (MoGene1.0st)   10371002 (MoGene1.0st)   1417313_at (Mouse Genome 430 2.0 Array)   1452755_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000044993
Ensembl peptide - ENSMUSP00000151340
NCBI entrez gene - 66094     See in Manteia.
MGI - MGI:1913344
RefSeq - XM_006513948
RefSeq - NM_001359148
RefSeq - NM_025349
RefSeq Peptide - NP_001346077
RefSeq Peptide - NP_079625
swissprot - Q9CQQ8
swissprot - A0A1W2P6N1
Ensembl - ENSMUSG00000035215
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lsm7ENSDARG00000058328Danio rerio
 LSM7ENSGALG00000000408Gallus gallus
 LSM7ENSG00000130332Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR017132  Sm-like protein Lsm7


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0000956 nuclear-transcribed mRNA catabolic process IEA
 biological_processGO:0006396 RNA processing IBA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006402 mRNA catabolic process ISO
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005688 U6 snRNP IBA
 cellular_componentGO:0005689 U12-type spliceosomal complex IBA
 cellular_componentGO:0005737 cytoplasm ISO
 cellular_componentGO:0071004 U2-type prespliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 cellular_componentGO:0097526 spliceosomal tri-snRNP complex IBA
 cellular_componentGO:1990726 Lsm1-7-Pat1 complex IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0046982 protein heterodimerization activity ISO


Pathways (from Reactome)
Pathway description
mRNA decay by 5 to 3 exoribonuclease
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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