ENSG00000130332


Homo sapiens

Features
Gene ID: ENSG00000130332
  
Biological name :LSM7
  
Synonyms : LSM7 / LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated / Q9UK45
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: -1
Band: p13.3
Gene start: 2321517
Gene end: 2328620
  
Corresponding Affymetrix probe sets: 204559_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000466556
Ensembl peptide - ENSP00000485007
Ensembl peptide - ENSP00000467145
Ensembl peptide - ENSP00000252622
NCBI entrez gene - 51690     See in Manteia.
OMIM - 607287
RefSeq - XM_017026869
RefSeq - NM_016199
RefSeq Peptide - NP_057283
swissprot - K7ENY5
swissprot - A0A087X2I5
swissprot - Q9UK45
swissprot - K7EML7
Ensembl - ENSG00000130332
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lsm7ENSDARG00000058328Danio rerio
 LSM7ENSGALG00000000408Gallus gallus
 Lsm7ENSMUSG00000035215Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR017132  Sm-like protein Lsm7


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0000956 nuclear-transcribed mRNA catabolic process IEA
 biological_processGO:0006396 RNA processing IBA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0043928 exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay TAS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005688 U6 snRNP IBA
 cellular_componentGO:0005689 U12-type spliceosomal complex IBA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0071004 U2-type prespliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 cellular_componentGO:0097526 spliceosomal tri-snRNP complex IBA
 cellular_componentGO:1990726 Lsm1-7-Pat1 complex IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0017070 U6 snRNA binding NAS


Pathways (from Reactome)
Pathway description
mRNA decay by 5 to 3 exoribonuclease
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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