ENSDARG00000058820


Danio rerio

Features
Gene ID: ENSDARG00000058820
  
Biological name :bin1b
  
Synonyms : bin1b / bridging integrator 1b
  
Possible biological names infered from orthology : BIN1 / bridging integrator 1 / Myc box-dependent-interacting protein 1 / O00499 / O08539
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 6999487
Gene end: 7052603
  
Corresponding Affymetrix probe sets: Dr.16843.1.A1_at (Zebrafish Array)   NM_001004602_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000124940
Ensembl peptide - ENSDARP00000125111
Ensembl peptide - ENSDARP00000155685
Ensembl peptide - ENSDARP00000076200
Ensembl peptide - ENSDARP00000124826
NCBI entrez gene - 447863     See in Manteia.
RefSeq - NM_001327970
RefSeq - NM_001004602
RefSeq Peptide - NP_001004602
RefSeq Peptide - NP_001314899
swissprot - F8W278
swissprot - F1QRX4
swissprot - F8W5F8
swissprot - F8W5X7
ZFIN ID - ZDB-GENE-030425-1
Ensembl - ENSDARG00000058820
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 BIN1ENSGALG00000011541Gallus gallus
 BIN1ENSG00000136717Homo sapiens
 Bin1ENSMUSG00000024381Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
bin1a / bridging integrator 1a / BIN1* / O00499* / O08539* / bridging integrator 1* / Myc box-dependent-interacting protein 1 *ENSDARG0000004211464
amph / amphiphysin / P49418* / Q7TQF7*ENSDARG0000000766348
bin2b / bridging integrator 2b / BIN2* / bridging integrator 2*ENSDARG0000001025542
bin2a / bridging integrator 2a / BIN2* / bridging integrator 2*ENSDARG0000000321934


Protein motifs (from Interpro)
Interpro ID Name
 IPR001452  SH3 domain
 IPR003005  Amphiphysin
 IPR004148  BAR domain
 IPR027267  AH/BAR domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030100 regulation of endocytosis IEA
 biological_processGO:0060048 cardiac muscle contraction IMP
 cellular_componentGO:0005737 cytoplasm IEA


Pathways (from Reactome)
Pathway description
Clathrin-mediated endocytosis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000009 cardiac ventricle cardiac ventricle decreased contractility , abnormal
Show

 ZFA:0001094 whole organism whole organism curved , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr