ENSG00000136717


Homo sapiens

Features
Gene ID: ENSG00000136717
  
Biological name :BIN1
  
Synonyms : BIN1 / bridging integrator 1 / O00499
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: q14.3
Gene start: 127048027
Gene end: 127107355
  
Corresponding Affymetrix probe sets: 202931_x_at (Human Genome U133 Plus 2.0 Array)   210201_x_at (Human Genome U133 Plus 2.0 Array)   210202_s_at (Human Genome U133 Plus 2.0 Array)   214439_x_at (Human Genome U133 Plus 2.0 Array)   214643_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000259238
Ensembl peptide - ENSP00000315284
Ensembl peptide - ENSP00000259237
Ensembl peptide - ENSP00000386797
Ensembl peptide - ENSP00000376761
Ensembl peptide - ENSP00000376760
Ensembl peptide - ENSP00000365281
Ensembl peptide - ENSP00000350654
Ensembl peptide - ENSP00000316779
Ensembl peptide - ENSP00000315411
Ensembl peptide - ENSP00000315388
NCBI entrez gene - 274     See in Manteia.
OMIM - 601248
RefSeq - XM_017003828
RefSeq - NM_139346
RefSeq - NM_139347
RefSeq - NM_139348
RefSeq - NM_139349
RefSeq - NM_139350
RefSeq - NM_139351
RefSeq - XM_005263642
RefSeq - XM_005263643
RefSeq - XM_005263645
RefSeq - XM_006712425
RefSeq - XM_006712426
RefSeq - XM_006712427
RefSeq - XM_006712428
RefSeq - XM_006712429
RefSeq - XM_006712431
RefSeq - XM_006712432
RefSeq - XM_006712433
RefSeq - XM_006712434
RefSeq - XM_011510975
RefSeq - XM_017003819
RefSeq - XM_017003820
RefSeq - XM_017003821
RefSeq - XM_017003822
RefSeq - XM_017003823
RefSeq - XM_017003824
RefSeq - XM_017003825
RefSeq - XM_017003826
RefSeq - XM_017003827
RefSeq - NM_001320632
RefSeq - NM_001320633
RefSeq - NM_001320634
RefSeq - NM_001320640
RefSeq - NM_001320641
RefSeq - NM_001320642
RefSeq - NM_004305
RefSeq - NM_139343
RefSeq - NM_139344
RefSeq - NM_139345
RefSeq Peptide - NP_001307562
RefSeq Peptide - NP_001307571
RefSeq Peptide - NP_004296
RefSeq Peptide - NP_647593
RefSeq Peptide - NP_647594
RefSeq Peptide - NP_647595
RefSeq Peptide - NP_647596
RefSeq Peptide - NP_647597
RefSeq Peptide - NP_647598
RefSeq Peptide - NP_647599
RefSeq Peptide - NP_647600
RefSeq Peptide - NP_647601
RefSeq Peptide - NP_001307561
RefSeq Peptide - NP_001307563
RefSeq Peptide - NP_001307569
RefSeq Peptide - NP_001307570
swissprot - A0A024RAJ2
swissprot - A0A024RAI6
swissprot - A0A024RAI5
swissprot - A0A024RAI4
swissprot - A0A024RAG9
swissprot - A0A024RAG8
swissprot - A0A024RAF6
swissprot - A0A024RAF1
swissprot - A0A024RAF0
swissprot - A0A024RAE9
swissprot - A0A024RAJ3
swissprot - O00499
Ensembl - ENSG00000136717
  
Related genetic diseases (OMIM): 255200 - Centronuclear myopathy 2, 255200
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 bin1aENSDARG00000042114Danio rerio
 bin1bENSDARG00000058820Danio rerio
 BIN1ENSGALG00000011541Gallus gallus
 Bin1ENSMUSG00000024381Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AMPH / P49418 / amphiphysinENSG0000007805348
BIN2 / bridging integrator 2ENSG0000011093432


Protein motifs (from Interpro)
Interpro ID Name
 IPR001452  SH3 domain
 IPR003005  Amphiphysin
 IPR003017  Amphiphysin, isoform 1
 IPR003023  Amphiphysin 2
 IPR004148  BAR domain
 IPR027267  AH/BAR domain superfamily
 IPR035471  Amphiphysin 2, SH3 domain
 IPR036028  SH3-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006897 endocytosis TAS
 biological_processGO:0006997 nucleus organization IMP
 biological_processGO:0007010 cytoskeleton organization TAS
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0008283 cell proliferation TAS
 biological_processGO:0008333 endosome to lysosome transport IMP
 biological_processGO:0016032 viral process IEA
 biological_processGO:0030100 regulation of endocytosis IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0042692 muscle cell differentiation IEA
 biological_processGO:0043065 positive regulation of apoptotic process IDA
 biological_processGO:0045664 regulation of neuron differentiation IMP
 biological_processGO:0048711 positive regulation of astrocyte differentiation IMP
 biological_processGO:0051647 nucleus localization IEA
 biological_processGO:0060988 lipid tube assembly IMP
 biological_processGO:0061024 membrane organization TAS
 biological_processGO:0071156 regulation of cell cycle arrest IDA
 biological_processGO:1902430 negative regulation of amyloid-beta formation IMP
 biological_processGO:1902960 negative regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process IMP
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005635 nuclear envelope IEA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005856 cytoskeleton IDA
 cellular_componentGO:0015629 actin cytoskeleton TAS
 cellular_componentGO:0016020 membrane TAS
 cellular_componentGO:0030018 Z disc ISS
 cellular_componentGO:0030315 T-tubule ISS
 cellular_componentGO:0030424 axon IDA
 cellular_componentGO:0031674 I band ISS
 cellular_componentGO:0033268 node of Ranvier ISS
 cellular_componentGO:0043194 axon initial segment ISS
 cellular_componentGO:0060987 lipid tube IMP
 molecular_functionGO:0002020 protease binding IPI
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0030276 clathrin binding TAS
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0048156 tau protein binding IPI
 molecular_functionGO:0051015 actin filament binding IDA
 molecular_functionGO:0051087 chaperone binding IPI
 molecular_functionGO:0070063 RNA polymerase binding IPI


Pathways (from Reactome)
Pathway description
Clathrin-mediated endocytosis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000276 Long face 
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000602 Ophthalmoplegia 
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001284 Areflexia 
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 HP:0001319 Neonatal hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in the neonatal period." [HPO:curators]
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 HP:0001371 Contractures 
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 HP:0001618 Dysphonia 
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 HP:0001761 Pes cavus 
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0002460 Distal muscle weakness "Reduced strength of the distal musculature." [HPO:curators]
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 HP:0002515 Waddling gait 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002747 Respiratory insufficiency due to muscle weakness 
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 HP:0002808 Kyphosis 
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 HP:0003307 Hyperlordosis 
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 HP:0003327 Axial muscle weakness "Reduced strength of the axial musculature (i.e., of the muscles of the head and neck, spine, and ribs)." [HPO:curators]
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 HP:0003391 Gower sign "A phenomen whereby patients are not able to stand up without the use of the hands owing to weakness of the proximal muscles of the lower limbs." [HPO:probinson]
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 HP:0003458 EMG myopathic abnormalities "The presence of abnormal electromyographic patterns indicative of myopathy, such as small-short polyphasic motor unit potentials." [HPO:curators]
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 HP:0003674 Age of onset 
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 HP:0003687 Centralized nuclei 
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 HP:0003691 Scapular winging 
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 HP:0003700 Generalized amyotrophy "Generalized wasting of loss of muscle tissue." [HPO:curators]
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 HP:0003701 Proximal muscle weakness "A lack of strength of the proximal muscles." [HPO:curators]
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 HP:0008872 Feeding problems in infancy 
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000078053 AMPH / P49418 / amphiphysin  / complex






 

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