ENSDARG00000059070


Danio rerio

Features
Gene ID: ENSDARG00000059070
  
Biological name :gars
  
Synonyms : gars / glycyl-tRNA synthetase
  
Possible biological names infered from orthology : Glycine--tRNA ligase / P41250 / Q9CZD3
  
Species: Danio rerio
  
Chr. number: 24
Strand: 1
Band:
Gene start: 20536056
Gene end: 20554969
  
Corresponding Affymetrix probe sets: Dr.873.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000076519
NCBI entrez gene - 337230     See in Manteia.
RefSeq - XM_017353962
swissprot - F1QUV7
ZFIN ID - ZDB-GENE-030131-9174
Ensembl - ENSDARG00000059070
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GARSENSGALG00000005694Gallus gallus
 GARSENSG00000106105Homo sapiens
 GarsENSMUSG00000029777Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000738  WHEP-TRS domain
 IPR002314  Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)
 IPR002315  Glycyl-tRNA synthetase
 IPR004154  Anticodon-binding
 IPR006195  Aminoacyl-tRNA synthetase, class II
 IPR009068  S15/NS1, RNA-binding
 IPR027031  Glycyl-tRNA synthetase/DNA polymerase subunit gamma-2
 IPR033731  Glycyl-tRNA synthetase-like core domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IMP
 biological_processGO:0006418 tRNA aminoacylation for protein translation IEA
 biological_processGO:0006426 glycyl-tRNA aminoacylation IEA
 biological_processGO:0070150 mitochondrial glycyl-tRNA aminoacylation IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0004812 aminoacyl-tRNA ligase activity IEA
 molecular_functionGO:0004820 glycine-tRNA ligase activity IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000095 pharyngeal arch 3-7 skeleton pharyngeal arch 3-7 skeleton quality , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000108 fin fin quality , abnormal
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 ZFA:0000114 heart heart quality , abnormal
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 ZFA:0000155 somite somite neuromuscular junction decreased area , abnormal
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 ZFA:0001089 myoseptum myoseptum U-shaped , abnormal
myoseptum muscle tendon junction morphology , abnormal
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 ZFA:0001094 whole organism whole organism decreased length , abnormal
whole organism dead , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001315 atrioventricular canal atrioventricular canal mesenchymal cell decreased amount , abnormal
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 ZFA:0005145 muscle muscle axonogenesis disrupted , abnormal
muscle neuromuscular junction decreased amount , abnormal
muscle Z disc decreased length , abnormal
muscle neuromuscular junction increased amount , abnormal
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 ZFA:0005277 skeletal muscle skeletal muscle myofibril decreased thickness , abnormal
skeletal muscle skeletal muscle myofibril disorganized , abnormal
skeletal muscle skeletal muscle myofibril loose , abnormal
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 ZFA:0009243 CaP motoneuron CaP motoneuron axon decreased amount , abnormal
CaP motoneuron axon decreased length , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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