ENSDARG00000059600


Danio rerio

Features
Gene ID: ENSDARG00000059600
  
Biological name :rabep1
  
Synonyms : rabaptin, RAB GTPase binding effector protein 1 / rabep1
  
Possible biological names infered from orthology : O35551 / Q15276
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 59030096
Gene end: 59083298
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000145026
Ensembl peptide - ENSDARP00000103673
NCBI entrez gene - 568064     See in Manteia.
RefSeq - NM_001123287
RefSeq Peptide - NP_001116759
swissprot - A2CEI3
ZFIN ID - ZDB-GENE-060526-165
Ensembl - ENSDARG00000059600
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RABEP1ENSGALG00000001737Gallus gallus
 Q15276ENSG00000029725Homo sapiens
 O35551ENSMUSG00000020817Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rabep2 / rabaptin, RAB GTPase binding effector protein 2 / Q91WG2* / Q9H5N1* / Rab GTPase-binding effector protein 2 *ENSDARG0000006121317


Protein motifs (from Interpro)
Interpro ID Name
 IPR003914  Rabaptin
 IPR015390  Rabaptin, GTPase-Rab5 binding domain
 IPR018514  Rabaptin coiled-coil domain
 IPR029880  Rabaptin-5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006897 endocytosis IEA
 biological_processGO:0010469 regulation of signaling receptor activity IEA
 biological_processGO:0043547 positive regulation of GTPase activity IEA
 biological_processGO:0060271 cilium assembly IMP
 cellular_componentGO:0005768 endosome IEA
 molecular_functionGO:0005096 GTPase activator activity IEA
 molecular_functionGO:0008083 growth factor activity IEA


Pathways (from Reactome)
Pathway description
TBC/RABGAPs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000047 peripheral olfactory organ peripheral olfactory organ cilium decreased length , abnormal
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 ZFA:0001094 whole organism whole organism lethal (sensu genetics) , abnormal
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 ZFA:0001117 post-vent region post-vent region curved ventral , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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