ENSDARG00000059794


Danio rerio

Features
Gene ID: ENSDARG00000059794
  
Biological name :kdm6al
  
Synonyms : kdm6al / lysine (K)-specific demethylase 6A, like
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 59854224
Gene end: 59895080
  
Corresponding Affymetrix probe sets: Dr.9441.1.A1_at (Zebrafish Array)   Dr.9441.2.S1_at (Zebrafish Array)   Dr.9441.3.A1_at (Zebrafish Array)   NM_001080193_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000128411
Ensembl peptide - ENSDARP00000077934
NCBI entrez gene - 569207     See in Manteia.
RefSeq - NM_001080193
RefSeq Peptide - NP_001073662
swissprot - A1L1S9
swissprot - X1WDW1
ZFIN ID - ZDB-GENE-070112-2002
Ensembl - ENSDARG00000059794
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
kdm6a / lysine (K)-specific demethylase 6A / UTY* / O70546* / O14607* / O15550* / lysine demethylase 6A* / Lysine-specific demethylase 6A * / ubiquitously transcribed tetratricopeptide repe...ENSDARG0000006175967
kdm6ba / lysine (K)-specific demethylase 6B, a / KDM6B* / O15054* / Q5NCY0* / lysine demethylase 6B* / Lysine-specific demethylase 6B *ENSDARG0000008808729
kdm6bb / lysine (K)-specific demethylase 6B, bENSDARG0000005692927


Protein motifs (from Interpro)
Interpro ID Name
 IPR003347  JmjC domain
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013026  Tetratricopeptide repeat-containing domain
 IPR019734  Tetratricopeptide repeat
 IPR029516  Histone demethylase UTY


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007420 brain development IMP
 biological_processGO:0007507 heart development IMP
 biological_processGO:0008354 germ cell migration IMP
 biological_processGO:0009952 anterior/posterior pattern specification IMP
 cellular_componentGO:0005575 cellular_component ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain decreased size , abnormal
Show

 ZFA:0000009 cardiac ventricle cardiac ventricle orientation atrium , abnormal
Show

 ZFA:0000029 hindbrain hindbrain decreased size , abnormal
Show

 ZFA:0000032 hypothalamus hypothalamus decreased thickness , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000109 forebrain forebrain nucleus elongated , abnormal
forebrain neuron differentiation decreased process quality , abnormal
Show

 ZFA:0000128 midbrain midbrain nucleus elongated , abnormal
midbrain neuron differentiation decreased process quality , abnormal
Show

 ZFA:0000135 notochord notochord morphology , abnormal
notochord degenerate , abnormal
Show

 ZFA:0000155 somite somite morphology , abnormal
Show

 ZFA:0000160 tegmentum tegmentum decreased thickness , abnormal
Show

 ZFA:0000445 optic tectum optic tectum decreased thickness , abnormal
Show

 ZFA:0000545 medulla oblongata medulla oblongata decreased thickness , abnormal
Show

 ZFA:0001094 whole organism whole organism anterior-posterior axis decreased length , abnormal
whole organism posterior region truncated , abnormal
Show

 ZFA:0001117 post-vent region post-vent region curved dorsal , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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