ENSDARG00000061348


Danio rerio

Features
Gene ID: ENSDARG00000061348
  
Biological name :adat1
  
Synonyms : adat1 / adenosine deaminase, tRNA-specific 1
  
Possible biological names infered from orthology : Mus musculus adenosine deaminase, tRNA-specific 1 (Adat1), transcript variant 3, mRNA. / Q9BUB4 / Q9JHI2
  
Species: Danio rerio
  
Chr. number: 25
Strand: 1
Band:
Gene start: 34811038
Gene end: 34833482
  
Corresponding Affymetrix probe sets: Dr.17409.1.A1_at (Zebrafish Array)   NM_001082887_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000081844
NCBI entrez gene - 792614     See in Manteia.
RefSeq - NM_001082887
RefSeq Peptide - NP_001076356
swissprot - F1R076
ZFIN ID - ZDB-GENE-070410-64
Ensembl - ENSDARG00000061348
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ADAT1ENSGALG00000000908Gallus gallus
 ADAT1ENSG00000065457Homo sapiens
 Adat1ENSMUSG00000031949Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
adar / adenosine deaminase, RNA-specific / P55265* / Q99MU3* / Mus musculus adenosine deaminase, RNA-specific (Adar), transcript variant 4, mRNA.*ENSDARG0000001238923
adarb1a / adenosine deaminase, RNA-specific, B1a / ADARB1* / P78563* / Q91ZS8* / adenosine deaminase, RNA specific B1* / Double-stranded RNA-specific editase 1 *ENSDARG0000004160922
adarb1b / adenosine deaminase, RNA-specific, B1b / ADARB1* / P78563* / Q91ZS8* / adenosine deaminase, RNA specific B1* / Double-stranded RNA-specific editase 1 *ENSDARG0000000354422
adarb2 / adenosine deaminase, RNA-specific, B2 (non-functional) / Q9JI20* / Q9NS39* / adenosine deaminase, RNA-specific, B2* / adenosine deaminase, RNA specific B2 (inactive)*ENSDARG0000007182320
adad1 / adenosine deaminase domain containing 1 (testis-specific) / Q96M93* / adenosine deaminase domain containing 1*ENSDARG0000008918119
adad2 / adenosine deaminase domain containing 2 / Q8NCV1*ENSDARG0000010562618


Protein motifs (from Interpro)
Interpro ID Name
 IPR002466  Adenosine deaminase/editase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006396 RNA processing IEA
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004000 adenosine deaminase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr