ENSDARG00000003544


Danio rerio

Features
Gene ID: ENSDARG00000003544
  
Biological name :adarb1b
  
Synonyms : adarb1b / adenosine deaminase, RNA-specific, B1b
  
Possible biological names infered from orthology : ADARB1 / adenosine deaminase, RNA specific B1 / Double-stranded RNA-specific editase 1 / P78563 / Q91ZS8
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 45227028
Gene end: 45541367
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000113492
Ensembl peptide - ENSDARP00000146245
Ensembl peptide - ENSDARP00000154696
NCBI entrez gene - 558759     See in Manteia.
swissprot - E9QJK5
ZFIN ID - ZDB-GENE-030219-15
Ensembl - ENSDARG00000003544
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ADARB1ENSGALG00000007527Gallus gallus
 ADARB1ENSG00000197381Homo sapiens
 Adarb1ENSMUSG00000020262Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
adarb1a / adenosine deaminase, RNA-specific, B1a / ADARB1* / P78563* / Q91ZS8* / adenosine deaminase, RNA specific B1* / Double-stranded RNA-specific editase 1 *ENSDARG0000004160983
adarb2 / adenosine deaminase, RNA-specific, B2 (non-functional) / Q9JI20* / Q9NS39* / adenosine deaminase, RNA-specific, B2* / adenosine deaminase, RNA specific B2 (inactive)*ENSDARG0000007182350
adar / adenosine deaminase, RNA-specific / P55265* / Q99MU3* / Mus musculus adenosine deaminase, RNA-specific (Adar), transcript variant 4, mRNA.*ENSDARG0000001238931
adad1 / adenosine deaminase domain containing 1 (testis-specific) / Q96M93* / adenosine deaminase domain containing 1*ENSDARG0000008918120
adad2 / adenosine deaminase domain containing 2 / Q8NCV1*ENSDARG0000010562617
adat1 / adenosine deaminase, tRNA-specific 1 / Q9BUB4* / Q9JHI2* / Mus musculus adenosine deaminase, tRNA-specific 1 (Adat1), transcript variant 3, mRNA.*ENSDARG0000006134815


Protein motifs (from Interpro)
Interpro ID Name
 IPR002466  Adenosine deaminase/editase
 IPR014720  Double-stranded RNA-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006396 RNA processing IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004000 adenosine deaminase activity IEA


Pathways (from Reactome)
Pathway description
C6 deamination of adenosine
Formation of editosomes by ADAR proteins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000041609 adarb1a / adenosine deaminase, RNA-specific, B1a / ADARB1* / P78563* / Q91ZS8* / adenosine deaminase, RNA specific B1* / Double-stranded RNA-specific editase 1 *  / reaction / complex
 ENSDARG00000003544 adarb1b / adenosine deaminase, RNA-specific, B1b / ADARB1* / P78563* / Q91ZS8* / adenosine deaminase, RNA specific B1* / Double-stranded RNA-specific editase 1 *  / complex / reaction






 

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