ENSDARG00000061802


Danio rerio

Features
Gene ID: ENSDARG00000061802
  
Biological name :cnot2
  
Synonyms : CCR4-NOT transcription complex, subunit 2 / cnot2
  
Possible biological names infered from orthology : Mus musculus CCR4-NOT transcription complex, subunit 2 (Cnot2), transcript variant 6, mRNA. / Q8C5L3 / Q9NZN8
  
Species: Danio rerio
  
Chr. number: 25
Strand: 1
Band:
Gene start: 28678851
Gene end: 28713510
  
Corresponding Affymetrix probe sets: Dr.1729.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000082816
Ensembl peptide - ENSDARP00000118983
Ensembl peptide - ENSDARP00000117431
Ensembl peptide - ENSDARP00000112926
NCBI entrez gene - 100037372     See in Manteia.
RefSeq - NM_001089524
RefSeq - XM_005163110
RefSeq Peptide - NP_001082993
swissprot - F1Q7P0
swissprot - E9QE21
swissprot - E9QCV7
swissprot - A4QN63
ZFIN ID - ZDB-GENE-070410-70
Ensembl - ENSDARG00000061802
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CNOT2ENSGALG00000010042Gallus gallus
 CNOT2ENSG00000111596Homo sapiens
 Cnot2ENSMUSG00000020166Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007282  NOT2/NOT3/NOT5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IBA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0017148 negative regulation of translation IBA
 cellular_componentGO:0000932 P-body IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0030015 CCR4-NOT core complex IBA


Pathways (from Reactome)
Pathway description
Deadenylation of mRNA
TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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