ENSGALG00000010042


Gallus gallus

Features
Gene ID: ENSGALG00000010042
  
Biological name :CNOT2
  
Synonyms : CCR4-NOT transcription complex subunit 2 / CNOT2
  
Possible biological names infered from orthology : Mus musculus CCR4-NOT transcription complex, subunit 2 (Cnot2), transcript variant 6, mRNA. / Q8C5L3 / Q9NZN8
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 35724872
Gene end: 35814526
  
Corresponding Affymetrix probe sets: Gga.9400.1.S1_s_at (Chicken Array)   Gga.9400.2.S1_s_at (Chicken Array)   GgaAffx.12204.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000016295
Ensembl peptide - ENSGALP00000060128
Ensembl peptide - ENSGALP00000045381
NCBI entrez gene - 417851     See in Manteia.
RefSeq - NM_001012808
RefSeq Peptide - NP_001012826
swissprot - A0A1L1RMZ1
swissprot - A0A1D5NYC4
swissprot - Q5ZKI3
Ensembl - ENSGALG00000010042
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cnot2ENSDARG00000061802Danio rerio
 CNOT2ENSG00000111596Homo sapiens
 Cnot2ENSMUSG00000020166Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007282  NOT2/NOT3/NOT5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IBA
 biological_processGO:0001829 trophectodermal cell differentiation IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0010606 positive regulation of cytoplasmic mRNA processing body assembly IEA
 biological_processGO:0017148 negative regulation of translation IBA
 biological_processGO:0033147 negative regulation of intracellular estrogen receptor signaling pathway IEA
 biological_processGO:2000036 regulation of stem cell population maintenance IEA
 cellular_componentGO:0000932 P-body IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0030014 CCR4-NOT complex IEA
 cellular_componentGO:0030015 CCR4-NOT core complex IBA
 molecular_functionGO:0001226 RNA polymerase II transcription corepressor binding IEA
 molecular_functionGO:0004535 poly(A)-specific ribonuclease activity IEA


Pathways (from Reactome)
Pathway description
Deadenylation of mRNA
TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr