ENSDARG00000062206


Danio rerio

Features
Gene ID: ENSDARG00000062206
  
Biological name :skiv2l
  
Synonyms : SKI2 homolog, superkiller viralicidic activity 2-like / skiv2l
  
Possible biological names infered from orthology : Q15477 / Ski2 like RNA helicase / superkiller viralicidic activity 2-like (S. cerevisiae)
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 26869428
Gene end: 26923957
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000084042
Ensembl peptide - ENSDARP00000146737
NCBI entrez gene - 559653     See in Manteia.
RefSeq - XM_005170047
swissprot - F1R881
ZFIN ID - ZDB-GENE-010430-5
Ensembl - ENSDARG00000062206
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q15477ENSG00000204351Homo sapiens
 Skiv2lENSMUSG00000040356Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
mtrex / Mtr4 exosome RNA helicase / P42285* / Q9CZU3* / Skiv2l2* / Superkiller viralicidic activity 2-like 2 *ENSDARG0000001345729


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR012961  ATP-dependent RNA helicase Ski2, C-terminal
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR016438  ATP-dependent RNA helicase Ski2-like
 IPR025696  rRNA-processing arch domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006401 RNA catabolic process IEA
 biological_processGO:0070478 nuclear-transcribed mRNA catabolic process, 3"-5" exonucleolytic nonsense-mediated decay IBA
 cellular_componentGO:0055087 Ski complex IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003724 RNA helicase activity IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
mRNA decay by 3 to 5 exoribonuclease


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000036778 hbs1l / HBS1-like translational GTPase / Q69ZS7* / Q9Y450* / HBS1-like protein *  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr