ENSG00000204351


Homo sapiens

Features
Gene ID: ENSG00000204351
  
Biological name :SKIV2L
  
Synonyms : Q15477 / Ski2 like RNA helicase / SKIV2L
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: 1
Band: p21.33
Gene start: 31959080
Gene end: 31969755
  
Corresponding Affymetrix probe sets: 203727_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000420470
Ensembl peptide - ENSP00000419905
Ensembl peptide - ENSP00000485707
Ensembl peptide - ENSP00000420332
Ensembl peptide - ENSP00000364543
Ensembl peptide - ENSP00000417586
NCBI entrez gene - 6499     See in Manteia.
OMIM - 600478
RefSeq - NM_006929
RefSeq - XM_011514815
RefSeq Peptide - NP_008860
swissprot - H7C4L3
swissprot - B4E0B4
swissprot - Q15477
swissprot - H7C5N0
swissprot - A0A1U9X8J1
swissprot - F8WDE8
Ensembl - ENSG00000204351
  
Related genetic diseases (OMIM): 614602 - Trichohepatoenteric syndrome 2, 614602
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 skiv2lENSDARG00000062206Danio rerio
 Skiv2lENSMUSG00000040356Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
MTREX / P42285 / Mtr4 exosome RNA helicaseENSG0000003912330
DDX60 / Q8IY21 / DExD/H-box helicase 60ENSG0000013762818
DDX60L / Q5H9U9 / DExD/H-box 60 likeENSG0000018138117


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR012961  ATP-dependent RNA helicase Ski2, C-terminal
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR016438  ATP-dependent RNA helicase Ski2-like
 IPR025696  rRNA-processing arch domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006401 RNA catabolic process IEA
 biological_processGO:0043928 exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay TAS
 biological_processGO:0070478 nuclear-transcribed mRNA catabolic process, 3"-5" exonucleolytic nonsense-mediated decay IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0055087 Ski complex IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003724 RNA helicase activity IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity TAS
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Association of TriC/CCT with target proteins during biosynthesis
mRNA decay by 3 to 5 exoribonuclease


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000445 Broad nose 
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 HP:0001394 Cirrhosis 
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 HP:0001508 Failure to thrive 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001518 Low birth weight 
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 HP:0002014 Diarrhea 
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 HP:0002224 Woolly hair 
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 HP:0002235 Pili canaliculi "Uncombable hair." [HPO:probinson]
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002299 Fine, brittle hair 
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 HP:0002583 Severe colitis 
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 HP:0002721 Immunodeficiency 
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 HP:0008070 Sparse hair 
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 HP:0009886 Trichorrhexis nodosa "Trichorrhexis nodosa is the formation of nodes along the hair shaft through which breakage readily occurs. It is thus a focal defect in the hair fiber that is characterized by thickening or weak points (nodes) that cause the hair to break off easily. The result is defective, abnormally fragile hair." [HPO:curators]
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 HP:0011220 Prominent forehead "Forward prominence of the entire forehead, due to protrusion of the frontal bone." [pmid:19125436]
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 HP:0011473 Villous atrophy "The enteric villi are atrophic or absent." [HPO:probinson]
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 HP:0012115 Hepatitis "Inflammation of the liver." [HPO:probinson]
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 HP:0030056 Uncombable hair "Hair that is disorderly, stands out from the scalp, and cannot be combed flat." []
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 HP:0040303 Decreased serum iron 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000140395 WDR61 / Q9GZS3 / WD repeat domain 61  / complex
 ENSG00000112339 HBS1L / Q9Y450 / HBS1 like translational GTPase  / complex
 ENSG00000198677 TTC37 / Q6PGP7 / tetratricopeptide repeat domain 37  / complex






 

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