ENSG00000198677


Homo sapiens

Features
Gene ID: ENSG00000198677
  
Biological name :TTC37
  
Synonyms : Q6PGP7 / tetratricopeptide repeat domain 37 / TTC37
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: q15
Gene start: 95463895
Gene end: 95555007
  
Corresponding Affymetrix probe sets: 1554029_a_at (Human Genome U133 Plus 2.0 Array)   203048_s_at (Human Genome U133 Plus 2.0 Array)   203049_s_at (Human Genome U133 Plus 2.0 Array)   233995_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000423141
Ensembl peptide - ENSP00000425403
Ensembl peptide - ENSP00000423742
Ensembl peptide - ENSP00000351596
Ensembl peptide - ENSP00000422749
NCBI entrez gene - 9652     See in Manteia.
OMIM - 614589
RefSeq - NM_014639
RefSeq Peptide - NP_055454
swissprot - H0Y915
swissprot - D6RDA0
swissprot - Q6PGP7
swissprot - H0Y964
swissprot - D6RCE2
Ensembl - ENSG00000198677
  
Related genetic diseases (OMIM): 222470 - Trichohepatoenteric syndrome 1, 222470
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ttc37ENSDARG00000074314Danio rerio
 TTC37ENSGALG00000014670Gallus gallus
 Ttc37ENSMUSG00000033991Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006597  Sel1-like repeat
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013026  Tetratricopeptide repeat-containing domain
 IPR019734  Tetratricopeptide repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0043928 exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay TAS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0035327 transcriptionally active chromatin IDA
 cellular_componentGO:0055087 Ski complex IDA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
mRNA decay by 3 to 5 exoribonuclease


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000154 Wide mouth "Abnormally wide mouth." [HPO:curators]
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 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
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 HP:0000193 Bifid uvula "A split or cleft uvula." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000343 Long philtrum 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000445 Broad nose 
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 HP:0000457 Flat nose 
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000520 Proptosis 
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 HP:0000952 Jaundice "Yellow pigmentation of the skin or sclera due to bilirubin, which in turn is the result of increased bilirubin concentration in the bloodstream." [HPO:curators]
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 HP:0001194 Abnormalities of placenta and umbilical cord "An abnormality of the placenta (the organ that connects the developing fetus to the uterine wall) or of the umbilical cord (the cord that connects the fetus to the placenta)." [HPO:curators]
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 HP:0001394 Cirrhosis 
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 HP:0001395 Hepatic fibrosis 
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 HP:0001399 Hepatic failure 
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 HP:0001508 Failure to thrive 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001518 Low birth weight 
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 HP:0001561 Polyhydramnios 
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001636 Tetralogy of Fallot "A congenital cardiac malformation comprising pulmonary stenosis, overriding aorta, ventricular septum defect, and right ventricular hypertrophy. The diagnosis of TOF is made if at least three of the four above mentioned features are present." [HPO:curators]
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 HP:0001642 Pulmonic stenosis "A narrowing of the right ventricular outflow tract that can occur at the pulmonary valve (valvular stenosis) or just below the pulmonary valve (infundibular stenosis). Infundibular pulmonic stenosis is mostly caused by overgrowth of the heart muscle wall (hypertrophy of the septoparietal trabeculae). Pulmonic stenosis is often seen as a part of Fallot s tetralogy, in which case the events leading to the formation of the overriding aorta are also believed to be a cause of the pulmonic stenosis. The pulmonic stenosis is the major cause of the malformations seen in patients with Fallot tetralogy, with the other associated malformations acting as compensatory mechanisms to the pulmonic stenosis. The degree of stenosis varies between individuals with TOF, and is the primary determinant of symptoms and severity. This malformation is infrequently described as sub-pulmonary stenosis or subpulmonary obstruction." [HPO:curators]
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 HP:0001659 Aortic insufficiency "An insufficiency of the aortic valve, leading to regurgitation (backward flow) of blood from the aorta into the left ventricle." [HPO:curators]
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 HP:0001732 Abnormality of the pancreas 
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 HP:0001894 Thrombocytosis 
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002041 Intractable diarrhea 
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 HP:0002212 Curly hair 
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 HP:0002213 Fine hair 
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 HP:0002224 Woolly hair 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002299 Fine, brittle hair 
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 HP:0002715 Immunological abnormality 
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 HP:0003073 Hypoalbuminemia "Reduction in the concentration of albumin in the blood." [HPO:curators]
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 HP:0003235 Hypermethioninemia 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004734 Renal cortical microcysts 
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 HP:0006267 Placental enlargement 
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 HP:0008070 Sparse hair 
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 HP:0008551 Underdeveloped ears 
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 HP:0009886 Trichorrhexis nodosa "Trichorrhexis nodosa is the formation of nodes along the hair shaft through which breakage readily occurs. It is thus a focal defect in the hair fiber that is characterized by thickening or weak points (nodes) that cause the hair to break off easily. The result is defective, abnormally fragile hair." [HPO:curators]
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 HP:0009891 Hypoplasia of the supraorbital ridges "Underdevelopment of the supraorbital ridges." [HPO:curators]
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 HP:0011031 Abnormality of iron homeostasis "An abnormality of the homeostasis (concentration) of `iron cation` (CHEBI:24875)." [HPO:probinson]
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 HP:0011220 Prominent forehead "Forward prominence of the entire forehead, due to protrusion of the frontal bone." [pmid:19125436]
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 HP:0011473 Villous atrophy "The enteric villi are atrophic or absent." [HPO:probinson]
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 HP:0011877 Increased mean platelet volume "Average platelet volume above the upper limit of the normal reference interval." [DDD:wouwehand]
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 HP:0012023 Galactosuria "Elevated concentration of `galactose` (CHEBI:28260) in the urine." [HPO:probinson]
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000140395 WDR61 / Q9GZS3 / WD repeat domain 61  / complex
 ENSG00000112339 HBS1L / Q9Y450 / HBS1 like translational GTPase  / complex
 ENSG00000204351 Q15477 / SKIV2L / Ski2 like RNA helicase  / complex






 

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