ENSDARG00000013457


Danio rerio

Features
Gene ID: ENSDARG00000013457
  
Biological name :mtrex
  
Synonyms : Mtr4 exosome RNA helicase / mtrex
  
Possible biological names infered from orthology : P42285 / Q9CZU3 / Skiv2l2 / Superkiller viralicidic activity 2-like 2
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 8197827
Gene end: 8266094
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000024380
NCBI entrez gene - 406795     See in Manteia.
RefSeq - NM_214768
RefSeq Peptide - NP_999933
swissprot - F1QD61
ZFIN ID - ZDB-GENE-040426-2854
Ensembl - ENSDARG00000013457
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SKIV2L2ENSGALG00000014709Gallus gallus
 MTREXENSG00000039123Homo sapiens
 Q9CZU3ENSMUSG00000016018Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
skiv2l / SKI2 homolog, superkiller viralicidic activity 2-like / Q15477* / Ski2 like RNA helicase* / superkiller viralicidic activity 2-like (S. cerevisiae)*ENSDARG0000006220635


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR012961  ATP-dependent RNA helicase Ski2, C-terminal
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR016438  ATP-dependent RNA helicase Ski2-like
 IPR025696  rRNA-processing arch domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000460 maturation of 5.8S rRNA IBA
 biological_processGO:0006401 RNA catabolic process IBA
 biological_processGO:0031101 fin regeneration IMP
 biological_processGO:0051781 positive regulation of cell division IMP
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003724 RNA helicase activity IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain decreased size , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0009091 melanocyte melanocyte decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr