ENSGALG00000014709


Gallus gallus

Features
Gene ID: ENSGALG00000014709
  
Biological name :SKIV2L2
  
Synonyms : SKIV2L2 / superkiller viralicidic activity 2-like 2
  
Possible biological names infered from orthology : Mtr4 exosome RNA helicase / MTREX / P42285 / Q9CZU3
  
Species: Gallus gallus
  
Chr. number: Z
Strand: 1
Band:
Gene start: 16760980
Gene end: 16805955
  
Corresponding Affymetrix probe sets: Gga.9870.1.S1_at (Chicken Array)   Gga.9870.1.S1_s_at (Chicken Array)   GgaAffx.11436.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000023673
NCBI entrez gene - 427137     See in Manteia.
RefSeq - NM_001012944
RefSeq - XM_015277305
RefSeq Peptide - NP_001012962
swissprot - F1N993
Ensembl - ENSGALG00000014709
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 mtrexENSDARG00000013457Danio rerio
 MTREXENSG00000039123Homo sapiens
 Q9CZU3ENSMUSG00000016018Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
DDX60* / Q8IY21* / DDX60L* / Q5H9U9* / DExD/H-box 60 like* / DExD/H-box helicase 60*ENSGALG000000381409
DDX60* / Q8IY21* / DDX60L* / Q5H9U9* / DExD/H-box 60 like* / DExD/H-box helicase 60*ENSGALG000000096395


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR012961  ATP-dependent RNA helicase Ski2, C-terminal
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR025696  rRNA-processing arch domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000460 maturation of 5.8S rRNA IEA
 biological_processGO:0006401 RNA catabolic process IBA
 cellular_componentGO:0000178 exosome (RNase complex) IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003724 RNA helicase activity IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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