ENSDARG00000062267


Danio rerio

Features
Gene ID: ENSDARG00000062267
  
Biological name :kdm3b
  
Synonyms : kdm3b / lysine (K)-specific demethylase 3B
  
Possible biological names infered from orthology : lysine demethylase 3B / Q7LBC6
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 21622154
Gene end: 21661015
  
Corresponding Affymetrix probe sets: Dr.380.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000133582
Ensembl peptide - ENSDARP00000148085
Ensembl peptide - ENSDARP00000144862
Ensembl peptide - ENSDARP00000138150
Ensembl peptide - ENSDARP00000084278
NCBI entrez gene - 326643     See in Manteia.
RefSeq - XM_005173138
RefSeq - XM_005173139
swissprot - E7F3X7
swissprot - A0A0R4ISI0
swissprot - A0A0R4IDZ5
ZFIN ID - ZDB-GENE-101007-4
Ensembl - ENSDARG00000062267
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 KDM3BENSGALG00000007663Gallus gallus
 KDM3BENSG00000120733Homo sapiens
 Kdm3bENSMUSG00000038773Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
jmjd1cb / jumonji domain containing 1Cb / JMJD1C* / Q15652* / Q69ZK6* / jumonji domain containing 1C* / Probable JmjC domain-containing histone demethylation protein 2C *ENSDARG0000007993931


Protein motifs (from Interpro)
Interpro ID Name
 IPR003347  JmjC domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IBA
 biological_processGO:0033169 histone H3-K9 demethylation IBA
 cellular_componentGO:0000785 chromatin IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000976 transcription regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0031490 chromatin DNA binding IBA
 molecular_functionGO:0032454 histone demethylase activity (H3-K9 specific) IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr