ENSGALG00000007663


Gallus gallus

Features
Gene ID: ENSGALG00000007663
  
Biological name :KDM3B
  
Synonyms : KDM3B / lysine demethylase 3B
  
Possible biological names infered from orthology : Q7LBC6
  
Species: Gallus gallus
  
Chr. number: 13
Strand: 1
Band:
Gene start: 18246002
Gene end: 18303342
  
Corresponding Affymetrix probe sets: Gga.13039.1.S1_at (Chicken Array)   Gga.17099.1.S1_s_at (Chicken Array)   GgaAffx.22319.1.S1_at (Chicken Array)   GgaAffx.22319.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000012399
Ensembl peptide - ENSGALP00000056567
Ensembl peptide - ENSGALP00000044570
NCBI entrez gene - 100859412     See in Manteia.
RefSeq - XM_004945064
RefSeq - XM_015294040
RefSeq - XM_015294041
swissprot - A0A1D5PUG4
swissprot - A0A1D5NW35
swissprot - F1NJZ2
Ensembl - ENSGALG00000007663
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 kdm3bENSDARG00000062267Danio rerio
 KDM3BENSG00000120733Homo sapiens
 Kdm3bENSMUSG00000038773Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
KDM3A / lysine-specific demethylase 3A / Q6PCM1* / Q9Y4C1* / lysine demethylase 3A*ENSGALG0000001580336
JMJD1C / jumonji domain containing 1C / Q15652* / Q69ZK6* / Probable JmjC domain-containing histone demethylation protein 2C *ENSGALG0000000294236


Protein motifs (from Interpro)
Interpro ID Name
 IPR003347  JmjC domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IBA
 biological_processGO:0033169 histone H3-K9 demethylation IBA
 cellular_componentGO:0000785 chromatin IBA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005654 nucleoplasm IEA
 molecular_functionGO:0000976 transcription regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0031490 chromatin DNA binding IBA
 molecular_functionGO:0032454 histone demethylase activity (H3-K9 specific) IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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