ENSGALG00000015803


Gallus gallus

Features
Gene ID: ENSGALG00000015803
  
Biological name :KDM3A
  
Synonyms : KDM3A / lysine-specific demethylase 3A
  
Possible biological names infered from orthology : lysine demethylase 3A / Q6PCM1 / Q9Y4C1
  
Species: Gallus gallus
  
Chr. number: 4
Strand: 1
Band:
Gene start: 86158502
Gene end: 86186024
  
Corresponding Affymetrix probe sets: Gga.17648.1.S1_at (Chicken Array)   Gga.17648.1.S1_s_at (Chicken Array)   GgaAffx.12759.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000036346
NCBI entrez gene - 422917     See in Manteia.
RefSeq - NM_001012891
RefSeq - XM_015285909
RefSeq Peptide - NP_001012909
swissprot - F1NJY8
Ensembl - ENSGALG00000015803
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 KDM3AENSG00000115548Homo sapiens
 Kdm3aENSMUSG00000053470Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
KDM3B / lysine demethylase 3B / Q7LBC6*ENSGALG0000000766347
JMJD1C / jumonji domain containing 1C / Q15652* / Q69ZK6* / Probable JmjC domain-containing histone demethylation protein 2C *ENSGALG0000000294237


Protein motifs (from Interpro)
Interpro ID Name
 IPR003347  JmjC domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0007290 spermatid nucleus elongation IEA
 biological_processGO:0009755 hormone-mediated signaling pathway IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0030521 androgen receptor signaling pathway IEA
 biological_processGO:0033169 histone H3-K9 demethylation IEA
 biological_processGO:0036123 histone H3-K9 dimethylation IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0046293 formaldehyde biosynthetic process IEA
 biological_processGO:0051573 negative regulation of histone H3-K9 methylation IEA
 biological_processGO:1990830 cellular response to leukemia inhibitory factor IEA
 biological_processGO:2000036 regulation of stem cell population maintenance IEA
 biological_processGO:2000736 regulation of stem cell differentiation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0000976 transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0000979 RNA polymerase II core promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0005506 iron ion binding IEA
 molecular_functionGO:0032454 histone demethylase activity (H3-K9 specific) IEA
 molecular_functionGO:0050681 androgen receptor binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr