ENSDARG00000062420


Danio rerio

Features
Gene ID: ENSDARG00000062420
  
Biological name :nfia
  
Synonyms : nfia / nuclear factor I/A
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 22
Strand: -1
Band:
Gene start: 16839467
Gene end: 17052381
  
Corresponding Affymetrix probe sets: Dr.14129.1.A1_at (Zebrafish Array)   Dr.15268.1.A1_at (Zebrafish Array)   NM_001079962_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000084675
Ensembl peptide - ENSDARP00000084670
Ensembl peptide - ENSDARP00000113262
Ensembl peptide - ENSDARP00000123045
NCBI entrez gene - 556665     See in Manteia.
RefSeq - NM_001079962
RefSeq Peptide - NP_001073431
swissprot - F1R2R8
swissprot - E9QDM0
swissprot - Q1L9A9
swissprot - Q1L9B0
ZFIN ID - ZDB-GENE-050208-501
Ensembl - ENSDARG00000062420
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
nfixb / nuclear factor I/Xb / NFIX* / Q14938* / P70257* / nuclear factor I X* / Nuclear factor 1 X-type *ENSDARG0000006183655
nfic / nuclear factor I/C / P08651* / P70255* / Nuclear factor 1 C-type *ENSDARG0000004321055
nfixa / nuclear factor I/Xa / NFIX* / Q14938* / P70257* / nuclear factor I X* / Nuclear factor 1 X-type *ENSDARG0000004322654


Protein motifs (from Interpro)
Interpro ID Name
 IPR000647  CTF transcription factor/nuclear factor 1
 IPR003619  MAD homology 1, Dwarfin-type
 IPR019548  CTF transcription factor/nuclear factor 1, N-terminal
 IPR019739  CTF transcription factor/nuclear factor 1, conserved site
 IPR020604  CTF transcription factor/nuclear factor 1, DNA-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006260 DNA replication IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr