ENSDARG00000061836


Danio rerio

Features
Gene ID: ENSDARG00000061836
  
Biological name :nfixb
  
Synonyms : nfixb / nuclear factor I/Xb
  
Possible biological names infered from orthology : NFIX / Nuclear factor 1 X-type / nuclear factor I X / P70257 / Q14938
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 14768364
Gene end: 15058464
  
Corresponding Affymetrix probe sets: Dr.13435.1.A1_at (Zebrafish Array)   NM_001040248_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000084668
Ensembl peptide - ENSDARP00000121809
NCBI entrez gene - 678521     See in Manteia.
RefSeq - NM_001040248
RefSeq Peptide - NP_001035338
swissprot - F1R834
swissprot - Q1RLS5
ZFIN ID - ZDB-GENE-060421-5000
Ensembl - ENSDARG00000061836
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NFIXENSG00000008441Homo sapiens
 NfixENSMUSG00000001911Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
nfixa / nuclear factor I/Xa / NFIX* / Q14938* / P70257* / nuclear factor I X* / Nuclear factor 1 X-type *ENSDARG0000004322678
nfia / nuclear factor I/AENSDARG0000006242058
nfic / nuclear factor I/C / P08651* / P70255* / Nuclear factor 1 C-type *ENSDARG0000004321049


Protein motifs (from Interpro)
Interpro ID Name
 IPR000647  CTF transcription factor/nuclear factor 1
 IPR003619  MAD homology 1, Dwarfin-type
 IPR019548  CTF transcription factor/nuclear factor 1, N-terminal
 IPR019739  CTF transcription factor/nuclear factor 1, conserved site
 IPR020604  CTF transcription factor/nuclear factor 1, DNA-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006260 DNA replication IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr