ENSDARG00000043210


Danio rerio

Features
Gene ID: ENSDARG00000043210
  
Biological name :nfic
  
Synonyms : nfic / nuclear factor I/C
  
Possible biological names infered from orthology : Nuclear factor 1 C-type / P08651 / P70255
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 20624510
Gene end: 20795631
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000118559
Ensembl peptide - ENSDARP00000083101
Ensembl peptide - ENSDARP00000114279
swissprot - B0S4Z1
swissprot - F1QBH7
swissprot - F1QF29
ZFIN ID - ZDB-GENE-080305-2
Ensembl - ENSDARG00000043210
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NFICENSGALG00000041643Gallus gallus
 NFICENSG00000141905Homo sapiens
 NficENSMUSG00000055053Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
nfia / nuclear factor I/AENSDARG0000006242054
nfixb / nuclear factor I/Xb / NFIX* / Q14938* / P70257* / nuclear factor I X* / Nuclear factor 1 X-type *ENSDARG0000006183646
nfixa / nuclear factor I/Xa / NFIX* / Q14938* / P70257* / nuclear factor I X* / Nuclear factor 1 X-type *ENSDARG0000004322645


Protein motifs (from Interpro)
Interpro ID Name
 IPR000647  CTF transcription factor/nuclear factor 1
 IPR003619  MAD homology 1, Dwarfin-type
 IPR019548  CTF transcription factor/nuclear factor 1, N-terminal
 IPR019739  CTF transcription factor/nuclear factor 1, conserved site
 IPR020604  CTF transcription factor/nuclear factor 1, DNA-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IBA
 biological_processGO:0006260 DNA replication IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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