ENSGALG00000041643


Gallus gallus

Features
Gene ID: ENSGALG00000041643
  
Biological name :NFIC
  
Synonyms : NFIC / Nuclear factor 1 C-type / P17926
  
Possible biological names infered from orthology : nuclear factor I C / P08651 / P70255
  
Species: Gallus gallus
  
Chr. number: 28
Strand: -1
Band:
Gene start: 1096192
Gene end: 1134022
  
Corresponding Affymetrix probe sets: Gga.708.1.S1_x_at (Chicken Array)   Gga.708.3.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000058595
Ensembl peptide - ENSGALP00000061240
Ensembl peptide - ENSGALP00000046060
Ensembl peptide - ENSGALP00000049611
Ensembl peptide - ENSGALP00000051626
NCBI entrez gene - 396208     See in Manteia.
RefSeq - XM_015299680
RefSeq - XM_015299673
RefSeq - XM_015299675
RefSeq - XM_015299676
RefSeq - XM_015299677
RefSeq - XM_015299678
RefSeq - XM_015299679
RefSeq - NM_205271
RefSeq - XM_015299672
RefSeq Peptide - NP_990602
swissprot - A0A1D5PA51
swissprot - A0A1D5P086
swissprot - P17926
swissprot - Q90930
swissprot - Q90931
Ensembl - ENSGALG00000041643
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nficENSDARG00000043210Danio rerio
 NFICENSG00000141905Homo sapiens
 NficENSMUSG00000055053Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NFIA / P17923 / Nuclear factor 1 A-type / Q12857* / Q02780* / nuclear factor I A*ENSGALG0000001092448
NFIB / P17924 / Nuclear factor 1 B-type / P97863* / O00712* / nuclear factor I B*ENSGALG0000000544146


Protein motifs (from Interpro)
Interpro ID Name
 IPR000647  CTF transcription factor/nuclear factor 1
 IPR003619  MAD homology 1, Dwarfin-type
 IPR019548  CTF transcription factor/nuclear factor 1, N-terminal
 IPR019739  CTF transcription factor/nuclear factor 1, conserved site
 IPR020604  CTF transcription factor/nuclear factor 1, DNA-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006260 DNA replication IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0042475 odontogenesis of dentin-containing tooth IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0001650 fibrillar center IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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