ENSGALG00000005441


Gallus gallus

Features
Gene ID: ENSGALG00000005441
  
Biological name :NFIB
  
Synonyms : NFIB / Nuclear factor 1 B-type / P17924
  
Possible biological names infered from orthology : nuclear factor I B / O00712 / P97863
  
Species: Gallus gallus
  
Chr. number: Z
Strand: -1
Band:
Gene start: 31375078
Gene end: 31540795
  
Corresponding Affymetrix probe sets: Gga.17307.1.S1_at (Chicken Array)   Gga.5956.1.S1_at (Chicken Array)   Gga.6791.1.A1_at (Chicken Array)   Gga.6791.1.A1_s_at (Chicken Array)   Gga.709.2.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000044762
Ensembl peptide - ENSGALP00000055038
Ensembl peptide - ENSGALP00000052519
Ensembl peptide - ENSGALP00000051564
Ensembl peptide - ENSGALP00000045896
Ensembl peptide - ENSGALP00000008721
NCBI entrez gene - 396209     See in Manteia.
RefSeq - XM_015280077
RefSeq - XM_015280078
RefSeq - XM_015280079
RefSeq - XM_015280080
RefSeq - XM_015280081
RefSeq - XM_015280082
RefSeq - NM_205272
RefSeq Peptide - NP_990603
swissprot - R9PXM2
swissprot - A0A1D5PFJ7
swissprot - A0A1D5NZS7
swissprot - A0A1D5NWM2
swissprot - P17924
swissprot - A0A1D5PQ76
Ensembl - ENSGALG00000005441
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NFIBENSG00000147862Homo sapiens
 NfibENSMUSG00000008575Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NFIA / P17923 / Nuclear factor 1 A-type / Q12857* / Q02780* / nuclear factor I A*ENSGALG0000001092453
NFIC / P17926 / Nuclear factor 1 C-type / P70255* / P08651* / nuclear factor I C*ENSGALG0000004164342


Protein motifs (from Interpro)
Interpro ID Name
 IPR000647  CTF transcription factor/nuclear factor 1
 IPR003619  MAD homology 1, Dwarfin-type
 IPR019548  CTF transcription factor/nuclear factor 1, N-terminal
 IPR019739  CTF transcription factor/nuclear factor 1, conserved site
 IPR020604  CTF transcription factor/nuclear factor 1, DNA-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IBA
 biological_processGO:0002062 chondrocyte differentiation ISS
 biological_processGO:0006260 DNA replication IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0008285 negative regulation of cell proliferation IEA
 biological_processGO:0010001 glial cell differentiation ISS
 biological_processGO:0021740 principal sensory nucleus of trigeminal nerve development ISS
 biological_processGO:0021960 anterior commissure morphogenesis ISS
 biological_processGO:0030324 lung development IEA
 biological_processGO:0030900 forebrain development IEA
 biological_processGO:0030902 hindbrain development IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II ISS
 biological_processGO:0060486 Clara cell differentiation ISS
 biological_processGO:0060509 type I pneumocyte differentiation ISS
 biological_processGO:0060510 type II pneumocyte differentiation ISS
 biological_processGO:0060662 salivary gland cavitation IEA
 biological_processGO:0060689 cell differentiation involved in salivary gland development IEA
 biological_processGO:0061141 lung ciliated cell differentiation ISS
 biological_processGO:0071679 commissural neuron axon guidance ISS
 biological_processGO:1902894 negative regulation of pri-miRNA transcription by RNA polymerase II IEA
 biological_processGO:2000791 negative regulation of mesenchymal cell proliferation involved in lung development ISS
 biological_processGO:2000795 negative regulation of epithelial cell proliferation involved in lung morphogenesis ISS
 cellular_componentGO:0001650 fibrillar center IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0044300 cerebellar mossy fiber ISS
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding ISS
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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