ENSDARG00000063297


Danio rerio

Features
Gene ID: ENSDARG00000063297
  
Biological name :abcb6a
  
Synonyms : abcb6a / ATP-binding cassette, sub-family B (MDR/TAP), member 6a
  
Possible biological names infered from orthology : ABCB6 / ATP-binding cassette, sub-family B (MDR/TAP), member 6 / ATP binding cassette subfamily B member 6 (Langereis blood group) / Q9DC29 / Q9NP58
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 6135176
Gene end: 6158609
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000086756
Ensembl peptide - ENSDARP00000155343
NCBI entrez gene - 564067     See in Manteia.
RefSeq - NM_001145693
RefSeq Peptide - NP_001139165
swissprot - F1QCK2
ZFIN ID - ZDB-GENE-050517-9
Ensembl - ENSDARG00000063297
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ABCB6ENSGALG00000029672Gallus gallus
 ABCB6ENSG00000115657Homo sapiens
 Abcb6ENSMUSG00000026198Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
abcb6b / ATP-binding cassette, sub-family B (MDR/TAP), member 6b / ABCB6* / Q9NP58* / Q9DC29* / ATP-binding cassette, sub-family B (MDR/TAP), member 6* / ATP binding cassette subfamily B me...ENSDARG0000007425457
abcb7 / ATP-binding cassette, sub-family B (MDR/TAP), member 7 / O75027* / Q61102* / ATP binding cassette subfamily B member 7*ENSDARG0000006279531


Protein motifs (from Interpro)
Interpro ID Name
 IPR003439  ABC transporter-like
 IPR003593  AAA+ ATPase domain
 IPR011527  ABC transporter type 1, transmembrane domain
 IPR017871  ABC transporter, conserved site
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR032410  Mitochondrial ABC-transporter, N-terminal five TM domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0061072 iris morphogenesis IMP
 biological_processGO:0097325 melanocyte proliferation IMP
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016887 ATPase activity IEA
 molecular_functionGO:0042626 ATPase activity, coupled to transmembrane movement of substances IEA


Pathways (from Reactome)
Pathway description
Mitochondrial ABC transporters


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001114 head head melanocyte decreased amount , abnormal
Show

 ZFA:0001238 iris iris perforate , abnormal
Show

 ZFA:0001283 pupil pupil morphology , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000063297 abcb6a / ATP-binding cassette, sub-family B (MDR/TAP), member 6a / ABCB6* / Q9NP58* / Q9DC29* / ATP-binding cassette, sub-family B (MDR/TAP), member 6* / ATP binding cassette subfamily B me...  / complex






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr