ENSDARG00000063627


Danio rerio

Features
Gene ID: ENSDARG00000063627
  
Biological name :bop1
  
Synonyms : block of proliferation 1 / bop1
  
Possible biological names infered from orthology : P97452 / Q14137 / Ribosome biosis protein BOP1
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 2930132
Gene end: 3056235
  
Corresponding Affymetrix probe sets: Dr.12295.1.S1_at (Zebrafish Array)   Dr.12295.2.A1_at (Zebrafish Array)   Dr.12295.2.A1_x_at (Zebrafish Array)   Dr.12295.3.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000120969
swissprot - G3N3Y4
ZFIN ID - ZDB-GENE-030219-109
Ensembl - ENSDARG00000063627
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 BOP1ENSG00000261236Homo sapiens
 Bop1ENSMUSG00000022557Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR012953  BOP1, N-terminal domain
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR028598  WD repeat BOP1/Erb1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
 biological_processGO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0042254 ribosome biogenesis IEA
 biological_processGO:0042273 ribosomal large subunit biogenesis IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0030687 preribosome, large subunit precursor IEA
 molecular_functionGO:0043021 ribonucleoprotein complex binding IEA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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