ENSDARG00000067979


Danio rerio

Features
Gene ID: ENSDARG00000067979
  
Biological name :gtf3c5
  
Synonyms : general transcription factor IIIC, polypeptide 5 / gtf3c5
  
Possible biological names infered from orthology : general transcription factor IIIC subunit 5 / Q8R2T8 / Q9Y5Q8 / ral transcription factor 3C polypeptide 5
  
Species: Danio rerio
  
Chr. number: 21
Strand: 1
Band:
Gene start: 11367253
Gene end: 11383108
  
Corresponding Affymetrix probe sets: Dr.17162.1.S1_at (Zebrafish Array)   XM_688483_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000086268
NCBI entrez gene - 565198     See in Manteia.
RefSeq - XM_688483
swissprot - E7EZ29
ZFIN ID - ZDB-GENE-060810-66
Ensembl - ENSDARG00000067979
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GTF3C5ENSGALG00000003441Gallus gallus
 GTF3C5ENSG00000148308Homo sapiens
 Gtf3c5ENSMUSG00000026816Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR019136  Transcription factor IIIC, subunit 5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0000127 transcription factor TFIIIC complex IBA
 molecular_functionGO:0001002 RNA polymerase III type 1 promoter sequence-specific DNA binding IBA
 molecular_functionGO:0001003 RNA polymerase III type 2 promoter sequence-specific DNA binding IBA


Pathways (from Reactome)
Pathway description
RNA Polymerase III Transcription Initiation From Type 1 Promoter
RNA Polymerase III Transcription Initiation From Type 2 Promoter


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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