ENSG00000148308


Homo sapiens

Features
Gene ID: ENSG00000148308
  
Biological name :GTF3C5
  
Synonyms : general transcription factor IIIC subunit 5 / GTF3C5 / Q9Y5Q8
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: 1
Band: q34.13
Gene start: 133030675
Gene end: 133058503
  
Corresponding Affymetrix probe sets: 217876_at (Human Genome U133 Plus 2.0 Array)   233173_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000397961
Ensembl peptide - ENSP00000389498
Ensembl peptide - ENSP00000393207
Ensembl peptide - ENSP00000339530
Ensembl peptide - ENSP00000361169
Ensembl peptide - ENSP00000361171
Ensembl peptide - ENSP00000361180
NCBI entrez gene - 9328     See in Manteia.
OMIM - 604890
RefSeq - XM_017015316
RefSeq - NM_001122823
RefSeq - NM_001286709
RefSeq - NM_012087
RefSeq - XM_005272234
RefSeq - XM_011519201
RefSeq - XM_017015315
RefSeq Peptide - NP_036219
RefSeq Peptide - NP_001116295
RefSeq Peptide - NP_001273638
swissprot - H7BY84
swissprot - Q5T7U4
swissprot - Q9Y5Q8
swissprot - H0Y5D2
swissprot - Q5T7U0
swissprot - Q5T7U1
Ensembl - ENSG00000148308
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gtf3c5ENSDARG00000067979Danio rerio
 GTF3C5ENSGALG00000003441Gallus gallus
 Gtf3c5ENSMUSG00000026816Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR019136  Transcription factor IIIC, subunit 5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IC
 biological_processGO:0006383 transcription by RNA polymerase III IC
 biological_processGO:0035914 skeletal muscle cell differentiation IEA
 biological_processGO:0042791 5S class rRNA transcription by RNA polymerase III IC
 biological_processGO:0042797 tRNA transcription by RNA polymerase III IC
 cellular_componentGO:0000127 transcription factor TFIIIC complex IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 molecular_functionGO:0001002 RNA polymerase III type 1 promoter sequence-specific DNA binding IBA
 molecular_functionGO:0001003 RNA polymerase III type 2 promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IC
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
RNA Polymerase III Abortive And Retractive Initiation
RNA Polymerase III Transcription Initiation From Type 1 Promoter
RNA Polymerase III Transcription Initiation From Type 2 Promoter


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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