ENSMUSG00000026816


Mus musculus

Features
Gene ID: ENSMUSG00000026816
  
Biological name :Gtf3c5
  
Synonyms : Gtf3c5 / Q8R2T8 / ral transcription factor 3C polypeptide 5
  
Possible biological names infered from orthology : general transcription factor IIIC subunit 5 / Q9Y5Q8
  
Species: Mus musculus
  
Chr. number: 2
Strand: -1
Band: A3
Gene start: 28566311
Gene end: 28583751
  
Corresponding Affymetrix probe sets: 10481291 (MoGene1.0st)   1423998_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000028157
Ensembl peptide - ENSMUSP00000109521
Ensembl peptide - ENSMUSP00000135165
NCBI entrez gene - 70239     See in Manteia.
MGI - MGI:1917489
RefSeq - XM_017319253
RefSeq - NM_001290484
RefSeq - NM_148928
RefSeq - XM_011239177
RefSeq Peptide - NP_683730
RefSeq Peptide - NP_001277413
swissprot - Q3UI98
swissprot - Q8R2T8
swissprot - H3BJX5
Ensembl - ENSMUSG00000026816
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gtf3c5ENSDARG00000067979Danio rerio
 GTF3C5ENSGALG00000003441Gallus gallus
 GTF3C5ENSG00000148308Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR019136  Transcription factor IIIC, subunit 5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0035914 skeletal muscle cell differentiation IMP
 cellular_componentGO:0000127 transcription factor TFIIIC complex ISO
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm ISO
 molecular_functionGO:0001002 RNA polymerase III type 1 promoter sequence-specific DNA binding IBA
 molecular_functionGO:0001003 RNA polymerase III type 2 promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase III Transcription Initiation From Type 1 Promoter
RNA Polymerase III Transcription Initiation From Type 2 Promoter


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0011100 complete preweaning lethality "death of all organisms of a given genotype in a population between fertilization and weaning age (Mus: approximately 3-4 weeks of age)" [MGI:csmith]
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Allelic Composition: Dolkem1(IMPC)J/Dolkem1(IMPC)J
Genetic Background: C57BL/6NJ-Dolkem1(IMPC)J/J

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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