ENSDARG00000069101


Danio rerio

Features
Gene ID: ENSDARG00000069101
  
Biological name :napbb
  
Synonyms : napbb / N-ethylmaleimide-sensitive factor attachment protein, beta b
  
Possible biological names infered from orthology : Beta-soluble NSF attachment protein / NAPB / NSF attachment protein beta / P28663 / Q9H115
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 45643823
Gene end: 45661053
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000106892
Ensembl peptide - ENSDARP00000113069
NCBI entrez gene - 568195     See in Manteia.
RefSeq - NM_001080702
RefSeq Peptide - NP_001074171
swissprot - F1Q9P4
swissprot - Q1LVM0
ZFIN ID - ZDB-GENE-070112-2132
Ensembl - ENSDARG00000069101
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NAPBENSGALG00000008313Gallus gallus
 NAPBENSG00000125814Homo sapiens
 NapbENSMUSG00000027438Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
napba / N-ethylmaleimide-sensitive factor attachment protein, beta a / NAPB* / Q9H115* / P28663* / NSF attachment protein beta* / Beta-soluble NSF attachment protein *ENSDARG0000001366992
napab / N-ethylmaleimide-sensitive factor attachment protein, alpha b / NAPA* / Q9DB05* / P54920* / NSF attachment protein alpha* / Alpha-soluble NSF attachment protein *ENSDARG0000002040578
napaa / N-ethylmaleimide-sensitive factor attachment protein, alpha a / NAPA* / Q9DB05* / P54920* / NSF attachment protein alpha* / Alpha-soluble NSF attachment protein *ENSDARG0000006760573


Protein motifs (from Interpro)
Interpro ID Name
 IPR000744  NSF attachment protein
 IPR011990  Tetratricopeptide-like helical domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IBA
 biological_processGO:0035494 SNARE complex disassembly IBA
 biological_processGO:0045494 photoreceptor cell maintenance IGI
 biological_processGO:0061025 membrane fusion IBA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005774 vacuolar membrane IBA
 cellular_componentGO:0031201 SNARE complex IBA
 molecular_functionGO:0005483 soluble NSF attachment protein activity IBA
 molecular_functionGO:0019905 syntaxin binding IBA


Pathways (from Reactome)
Pathway description
COPII-mediated vesicle transport
COPI-mediated anterograde transport
COPI-dependent Golgi-to-ER retrograde traffic
Intra-Golgi traffic
Retrograde transport at the Trans-Golgi-Network


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000152 retina retina photoreceptor cell degenerate , abnormal
retina apoptotic process increased occurrence , abnormal
Show

 ZFA:0001330 retinal outer plexiform layer retinal outer plexiform layer aplastic , abnormal
Show

 ZFA:0001464 retinal outer nuclear layer retinal outer nuclear layer aplastic , abnormal
retinal outer nuclear layer absent , abnormal
Show

 ZFA:0009127 photoreceptor cell photoreceptor cell decreased amount , abnormal
photoreceptor cell photoreceptor outer segment aplastic/hypoplastic , abnormal
photoreceptor cell apoptotic , abnormal
photoreceptor cell nucleus shape , abnormal
photoreceptor cell Golgi apparatus physical object quality , abnormal
photoreceptor cell Golgi cisterna hypoplastic , abnormal
Show

 ZFA:0009221 UV sensitive photoreceptor cell UV sensitive photoreceptor cell decreased amount , abnormal
Show

 ZFA:0009222 blue sensitive photoreceptor cell blue sensitive photoreceptor cell decreased amount , abnormal
Show

 ZFA:0009223 green sensitive photoreceptor cell green sensitive photoreceptor cell decreased amount , abnormal
Show

 ZFA:0009224 red sensitive photoreceptor cell red sensitive photoreceptor cell decreased amount , abnormal
Show

 ZFA:0009262 retinal cone cell retinal cone cell decreased amount , abnormal
Show

 ZFA:0009275 retinal rod cell retinal rod cell decreased amount , abnormal
Show

 ZFA:0009315 horizontal cell horizontal cell absent , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr