ENSDARG00000069422


Danio rerio

Features
Gene ID: ENSDARG00000069422
  
Biological name :nhp2
  
Synonyms : nhp2 / NHP2 ribonucleoprotein homolog (yeast) / Q6PBV6
  
Possible biological names infered from orthology : H/ACA ribonucleoprotein complex subunit 2 / NHP2 ribonucleoprotein / Q9CRB2 / Q9NX24
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 30401784
Gene end: 30409204
  
Corresponding Affymetrix probe sets: Dr.1506.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000091811
NCBI entrez gene - 100003787     See in Manteia.
RefSeq - NM_212597
RefSeq Peptide - NP_997762
swissprot - Q6PBV6
ZFIN ID - ZDB-GENE-030131-533
Ensembl - ENSDARG00000069422
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NHP2ENSGALG00000033666Gallus gallus
 NHP2ENSG00000145912Homo sapiens
 Nhp2ENSMUSG00000001056Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002415  H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote
 IPR004038  Ribosomal protein L7Ae/L30e/S12e/Gadd45
 IPR018492  Ribosomal protein L7Ae/L8/Nhp2 family
 IPR029064  50S ribosomal protein L30e-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000469 cleavage involved in rRNA processing IBA
 biological_processGO:0000470 maturation of LSU-rRNA IBA
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0006412 translation IBA
 biological_processGO:0031118 rRNA pseudouridine synthesis ISS
 biological_processGO:0031120 snRNA pseudouridine synthesis IBA
 biological_processGO:0042254 ribosome biogenesis IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005732 small nucleolar ribonucleoprotein complex ISS
 cellular_componentGO:0031429 box H/ACA snoRNP complex IBA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0030515 snoRNA binding ISS
 molecular_functionGO:0034513 box H/ACA snoRNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr