ENSDARG00000070127


Danio rerio

Features
Gene ID: ENSDARG00000070127
  
Biological name :nfxl1
  
Synonyms : nfxl1 / nuclear transcription factor, X-box binding-like 1
  
Possible biological names infered from orthology : Q6ZNB6
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 43870886
Gene end: 43929041
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000093433
Ensembl peptide - ENSDARP00000124661
NCBI entrez gene - 100333008     See in Manteia.
swissprot - E7EYV6
swissprot - F8W2N9
ZFIN ID - ZDB-GENE-110411-178
Ensembl - ENSDARG00000070127
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NFXL1ENSGALG00000014138Gallus gallus
 NFXL1ENSG00000170448Homo sapiens
 Nfxl1ENSMUSG00000072889Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:dkey-10f23.2 / NFX1* / B1AY10* / Q12986* / Transcriptional repressor NF-X1 * / nuclear transcription factor, X-box binding 1*ENSDARG0000010566925


Protein motifs (from Interpro)
Interpro ID Name
 IPR000967  Zinc finger, NF-X1-type
 IPR001841  Zinc finger, RING-type
 IPR019786  Zinc finger, PHD-type, conserved site
 IPR034078  Transcription factor NFX1 family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0001078 transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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