ENSDARG00000070151


Danio rerio

Features
Gene ID: ENSDARG00000070151
  
Biological name :nfyc
  
Synonyms : nfyc / nuclear transcription factor Y, gamma
  
Possible biological names infered from orthology : Mus musculus nuclear transcription factor-Y gamma (Nfyc), transcript variant 4, mRNA. / nuclear transcription factor Y subunit gamma / P70353 / Q13952
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 42071033
Gene end: 42119699
  
Corresponding Affymetrix probe sets: Dr.157.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000156799
Ensembl peptide - ENSDARP00000157483
Ensembl peptide - ENSDARP00000126159
Ensembl peptide - ENSDARP00000133372
Ensembl peptide - ENSDARP00000135886
NCBI entrez gene - 323445     See in Manteia.
swissprot - A0A0R4IG56
swissprot - Q1L940
swissprot - Q6P0F1
swissprot - Q7ZVY3
ZFIN ID - ZDB-GENE-030131-2165
Ensembl - ENSDARG00000070151
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NFYCENSGALG00000003189Gallus gallus
 NFYCENSG00000066136Homo sapiens
 NfycENSMUSG00000032897Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pole4 / polymerase (DNA-directed), epsilon 4, accessory subunit / Q9CQ36* / Q9NR33* / DNA polymerase epsilon 4, accessory subunit* / polymerase (DNA-directed), epsilon 4 (p12 subunit)*ENSDARG0000001301611


Protein motifs (from Interpro)
Interpro ID Name
 IPR003958  Transcription factor CBF/NF-Y/archaeal histone domain
 IPR009072  Histone-fold
 IPR027170  Transcriptional activator NFYC/HAP5 subunit


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0060041 retina development in camera-type eye IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0016602 CCAAT-binding factor complex IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000112 gut gut hypoplastic , abnormal
gut quality , abnormal
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 ZFA:0000114 heart heart quality , abnormal
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 ZFA:0000123 liver liver hypoplastic , abnormal
liver quality , abnormal
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 ZFA:0000152 retina retina quality , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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