ENSGALG00000003189


Gallus gallus

Features
Gene ID: ENSGALG00000003189
  
Biological name :NFYC
  
Synonyms : NFYC / nuclear transcription factor Y subunit gamma
  
Possible biological names infered from orthology : Mus musculus nuclear transcription factor-Y gamma (Nfyc), transcript variant 4, mRNA. / P70353 / Q13952
  
Species: Gallus gallus
  
Chr. number: 23
Strand: 1
Band:
Gene start: 4927211
Gene end: 4955061
  
Corresponding Affymetrix probe sets: Gga.19691.1.S1_at (Chicken Array)   Gga.20012.1.S1_at (Chicken Array)   Gga.8334.1.S1_at (Chicken Array)   GgaAffx.25776.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000048679
Ensembl peptide - ENSGALP00000063920
Ensembl peptide - ENSGALP00000059862
Ensembl peptide - ENSGALP00000059337
Ensembl peptide - ENSGALP00000058126
Ensembl peptide - ENSGALP00000057574
Ensembl peptide - ENSGALP00000056164
Ensembl peptide - ENSGALP00000034390
Ensembl peptide - ENSGALP00000045029
NCBI entrez gene - 419642     See in Manteia.
RefSeq - XM_015297837
RefSeq - XM_004947797
RefSeq - XM_015297832
RefSeq - XM_015297833
RefSeq - XM_015297834
RefSeq - XM_015297835
RefSeq - XM_015297836
swissprot - A0A1L1RYJ5
swissprot - A0A1L1RKP9
swissprot - A0A1D5PX80
swissprot - A0A1D5PTC1
swissprot - A0A1D5P7I9
swissprot - A0A1D5NXD4
swissprot - F1P0P8
Ensembl - ENSGALG00000003189
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nfycENSDARG00000070151Danio rerio
 NFYCENSG00000066136Homo sapiens
 NfycENSMUSG00000032897Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
POLE4 / DNA polymerase epsilon 4, accessory subunit / Q9CQ36* / Q9NR33* / polymerase (DNA-directed), epsilon 4 (p12 subunit)*ENSGALG000000316799


Protein motifs (from Interpro)
Interpro ID Name
 IPR003958  Transcription factor CBF/NF-Y/archaeal histone domain
 IPR009072  Histone-fold
 IPR027170  Transcriptional activator NFYC/HAP5 subunit


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0016602 CCAAT-binding factor complex IEA
 cellular_componentGO:0032993 protein-DNA complex IEA
 cellular_componentGO:0090575 RNA polymerase II transcription factor complex IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000980 RNA polymerase II distal enhancer sequence-specific DNA binding IEA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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