ENSMUSG00000032897


Mus musculus

Features
Gene ID: ENSMUSG00000032897
  
Biological name :Nfyc
  
Synonyms : Mus musculus nuclear transcription factor-Y gamma (Nfyc), transcript variant 4, mRNA. / Nfyc / P70353
  
Possible biological names infered from orthology : nuclear transcription factor Y subunit gamma / Q13952
  
Species: Mus musculus
  
Chr. number: 4
Strand: -1
Band: D2.2
Gene start: 120757438
Gene end: 120831572
  
Corresponding Affymetrix probe sets: 10394392 (MoGene1.0st)   10515974 (MoGene1.0st)   1448963_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000114591
Ensembl peptide - ENSMUSP00000112810
Ensembl peptide - ENSMUSP00000114640
Ensembl peptide - ENSMUSP00000117646
Ensembl peptide - ENSMUSP00000047441
Ensembl peptide - ENSMUSP00000095516
Ensembl peptide - ENSMUSP00000112610
NCBI entrez gene - 18046     See in Manteia.
MGI - MGI:107901
RefSeq - XM_017320025
RefSeq - NM_001048168
RefSeq - NM_001277095
RefSeq - NM_001357192
RefSeq - NM_008692
RefSeq - XM_006502846
RefSeq - XM_006502849
RefSeq - XM_006502851
RefSeq - XM_017320023
RefSeq - XM_017320024
RefSeq Peptide - NP_001344122
RefSeq Peptide - NP_032718
RefSeq Peptide - NP_001041633
RefSeq Peptide - NP_001264024
RefSeq Peptide - NP_001344121
RefSeq Peptide - NP_001344123
swissprot - A2A764
swissprot - A2A763
swissprot - P70353
swissprot - A2A762
Ensembl - ENSMUSG00000032897
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nfycENSDARG00000070151Danio rerio
 NFYCENSGALG00000003189Gallus gallus
 NFYCENSG00000066136Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Pole4 / Q9CQ36 / polymerase (DNA-directed), epsilon 4 (p12 subunit) / Q9NR33* / DNA polymerase epsilon 4, accessory subunit*ENSMUSG0000003004210


Protein motifs (from Interpro)
Interpro ID Name
 IPR003958  Transcription factor CBF/NF-Y/archaeal histone domain
 IPR009072  Histone-fold
 IPR027170  Transcriptional activator NFYC/HAP5 subunit


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated ISO
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IDA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005667 transcription factor complex IC
 cellular_componentGO:0016602 CCAAT-binding factor complex ISO
 cellular_componentGO:0032993 protein-DNA complex ISO
 cellular_componentGO:0090575 RNA polymerase II transcription factor complex ISO
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0000980 RNA polymerase II distal enhancer sequence-specific DNA binding ISO
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding ISO
 molecular_functionGO:0003700 DNA-binding transcription factor activity IDA
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding ISO
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000020248 Nfyb / P63139 / Nuclear transcription factor Y subunit beta / P25208*  / complex
 ENSMUSG00000020538 Q9WTN3 / Srebf1 / Mus musculus sterol regulatory element binding transcription factor 1 (Srebf1), transcript variant 4, mRNA. / P36956* / sterol regulatory element binding transcription factor 1*  / complex / reaction
 ENSMUSG00000023994 Nfya / P23708 / Mus musculus nuclear transcription factor-Y alpha (Nfya), transcript variant 3, mRNA. / P23511* / nuclear transcription factor Y subunit alpha*  / complex






 

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