ENSDARG00000070170


Danio rerio

Features
Gene ID: ENSDARG00000070170
  
Biological name :si:ch211-225p5.8
  
Synonyms : si:ch211-225p5.8
  
Possible biological names infered from orthology : P97952 / Q07699 / SCN1B / Sodium channel subunit beta-1 / sodium voltage-gated channel beta subunit 1
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 41974438
Gene end: 41984133
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000093546
NCBI entrez gene - 555567     See in Manteia.
RefSeq - NM_001111151
RefSeq Peptide - NP_001104621
swissprot - A8E7Q8
ZFIN ID - ZDB-GENE-060503-783
Ensembl - ENSDARG00000070170
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SCN1BENSG00000105711Homo sapiens
 Scn1bENSMUSG00000019194Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
scn1bb / sodium channel, voltage-gated, type I, beta b / SCN1B* / Q07699* / sodium voltage-gated channel beta subunit 1*ENSDARG0000010500343
scn1ba / sodium channel, voltage-gated, type I, beta a / SCN1B* / Q07699* / P97952* / Sodium channel subunit beta-1 * / sodium voltage-gated channel beta subunit 1*ENSDARG0000006022240
scn3b / sodium channel, voltage-gated, type III, beta / Q8BHK2* / Q9NY72* / sodium voltage-gated channel beta subunit 3*ENSDARG0000006235930


Protein motifs (from Interpro)
Interpro ID Name
 IPR003599  Immunoglobulin subtype
 IPR007110  Immunoglobulin-like domain
 IPR013106  Immunoglobulin V-set domain
 IPR013783  Immunoglobulin-like fold
 IPR027098  Sodium channel subunit beta-1/beta-3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006814 sodium ion transport IEA
 biological_processGO:0065009 regulation of molecular function IEA
 cellular_componentGO:0001518 voltage-gated sodium channel complex IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0017080 sodium channel regulator activity IEA


Pathways (from Reactome)
Pathway description
Phase 0 - rapid depolarisation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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