ENSG00000105711


Homo sapiens

Features
Gene ID: ENSG00000105711
  
Biological name :SCN1B
  
Synonyms : Q07699 / SCN1B / sodium voltage-gated channel beta subunit 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: 1
Band: q13.11
Gene start: 35030466
Gene end: 35040449
  
Corresponding Affymetrix probe sets: 205508_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000492247
Ensembl peptide - ENSP00000396915
Ensembl peptide - ENSP00000492655
Ensembl peptide - ENSP00000468848
Ensembl peptide - ENSP00000492022
Ensembl peptide - ENSP00000262631
NCBI entrez gene - 6324     See in Manteia.
OMIM - 600235
RefSeq - NM_001037
RefSeq - NM_001321605
RefSeq - NM_199037
RefSeq Peptide - NP_001028
RefSeq Peptide - NP_001308534
RefSeq Peptide - NP_950238
swissprot - Q07699
swissprot - A0A1W2PS68
swissprot - A0A1W2PR05
swissprot - B4DI92
Ensembl - ENSG00000105711
  
Related genetic diseases (OMIM): 604233 - Epilepsy, generalized, with febrile seizures plus, type 1, 604233
  612838 - Brugada syndrome 5, 612838
  615377 - Atrial fibrillation, familial, 13, 615377
  617350 - Epileptic encephalopathy, early infantile, 52, 617350
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 scn1baENSDARG00000060222Danio rerio
 scn1bbENSDARG00000105003Danio rerio
 si:ch211-225p5.8ENSDARG00000070170Danio rerio
 Scn1bENSMUSG00000019194Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SCN3B / Q9NY72 / sodium voltage-gated channel beta subunit 3ENSG0000016625724


Protein motifs (from Interpro)
Interpro ID Name
 IPR013106  Immunoglobulin V-set domain
 IPR013783  Immunoglobulin-like fold
 IPR027098  Sodium channel subunit beta-1/beta-3
 IPR036179  Immunoglobulin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002028 regulation of sodium ion transport IEA
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006814 sodium ion transport IEA
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007268 chemical synaptic transmission TAS
 biological_processGO:0007411 axon guidance IEA
 biological_processGO:0010765 positive regulation of sodium ion transport IDA
 biological_processGO:0010976 positive regulation of neuron projection development IEA
 biological_processGO:0019227 neuronal action potential propagation IEA
 biological_processGO:0021966 corticospinal neuron axon guidance IEA
 biological_processGO:0034765 regulation of ion transmembrane transport IEA
 biological_processGO:0035725 sodium ion transmembrane transport IEA
 biological_processGO:0040011 locomotion IEA
 biological_processGO:0046684 response to pyrethroid IEA
 biological_processGO:0051899 membrane depolarization IDA
 biological_processGO:0060048 cardiac muscle contraction IMP
 biological_processGO:0060307 regulation of ventricular cardiac muscle cell membrane repolarization IEA
 biological_processGO:0060371 regulation of atrial cardiac muscle cell membrane depolarization IMP
 biological_processGO:0061337 cardiac conduction IEA
 biological_processGO:0065009 regulation of molecular function IEA
 biological_processGO:0086002 cardiac muscle cell action potential involved in contraction IMP
 biological_processGO:0086012 membrane depolarization during cardiac muscle cell action potential IEA
 biological_processGO:0086047 membrane depolarization during Purkinje myocyte cell action potential IMP
 biological_processGO:0086091 regulation of heart rate by cardiac conduction IMP
 biological_processGO:2000649 regulation of sodium ion transmembrane transporter activity IDA
 cellular_componentGO:0001518 voltage-gated sodium channel complex IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0014704 intercalated disc IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030315 T-tubule IEA
 cellular_componentGO:0033268 node of Ranvier IEA
 cellular_componentGO:0034706 sodium channel complex IEA
 molecular_functionGO:0005244 voltage-gated ion channel activity IEA
 molecular_functionGO:0005248 voltage-gated sodium channel activity IDA
 molecular_functionGO:0005272 sodium channel activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0017080 sodium channel regulator activity IEA
 molecular_functionGO:0019871 sodium channel inhibitor activity IEA
 molecular_functionGO:0086006 voltage-gated sodium channel activity involved in cardiac muscle cell action potential IEA
 molecular_functionGO:0086062 voltage-gated sodium channel activity involved in Purkinje myocyte action potential IMP


Pathways (from Reactome)
Pathway description
Interaction between L1 and Ankyrins
Phase 0 - rapid depolarisation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000992 Photosensitivity "An increased sensitivity of the skin to light. Photosensitivity may result in a rash upon exposure to the sun (which is known as photodermatosis). Photosensitivity can be diagnosed by phototests in which light is shone on small areas of skin." [HPO:curators]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001650 Aortic stenosis "The presence of a stenosis (narrowing) of the aortic valve." [HPO:curators]
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 HP:0001663 Ventricular fibrillation 
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 HP:0002069 Generalized tonic-clonic seizures "Generalized tonic-clonic seizures are `generalized seizures` (HP:0002197) in which the patient suddenly loses conciousness, the eyes roll back, and the entire body musculature undergoes tonic contractions. In the clonic phase of the seizure, there are rhythmic contractions of the musculature alternating with relaxation of all muscle groups. Loss of sphincter control during the seizure is common. This form of seizure was formerly commonly called grand mal seizure." [HPO:curators]
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 HP:0002070 Limb ataxia 
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 HP:0002121 Absence seizures "Recurrent absence seizures are `generalized seizures` (HP:0002197) that are characterized by a sudden cessation of motor activity and by a blank facial expression with flickering of the eyelids. There is no convulsive muscular activity or loss of postural control." [HPO:probinson]
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 HP:0002123 Myoclonic seizures "Myoclonic seizures are sudden, brief losses of consciousness and postural tone not associated with tonic muscular contractions. Myoclonic seizures may involve one body part or the entire body. In the latter case, the myoclonic seizure is accompanied by a violent fall but not by loss of consciousness." [HPO:curators]
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 HP:0002266 Focal clonic seizures 
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002373 Febrile seizures "Febrile seizures are convulsions induced by a fever in infants or small children and are generally characterized by loss of consciousness and tonic-clonic movements. Most febrile seizures last a minute or two." [HPO:curators]
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 HP:0002384 Complex partial seizures "A `partial seizure` (HP:0007359) characterized by impairment or loss of consciousness." [HPO:curators]
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 HP:0003829 Incomplete penetrance 
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 HP:0004757 paroxysmal atrial fibrillation 
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 HP:0006813 Unilateral clonic seizures 
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 HP:0007256 Mild pyramidal signs 
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 HP:0007270 Atypical absence seizures 
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 HP:0007334 Partial seizures with secondary generalization "`Partial seizures` (HP:0007359) with secondary evolution into a `generalized seizures` (HP:0002197)." [HPO:probinson]
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 HP:0010819 Atonic seizures "A type of `seizure` (HP:0001250) characterized by a suddenloss of musle tone. Usually, consciousness is retained. In an atonic seizure, the eyelids may droop, the head may nod, and the person may drop things and fall to the ground." [HPO:probinson]
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 HP:0011151 Obtundation status "Atypical absence lasting for more than 30 minutes." [HPO:jalbers]
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 HP:0011675 Arrhythmia "Any cardiac rhythm other than the normal sinus rhythm. Such a rhythm may be either of sinus or ectopic origin and either regular or irregular. An arrhythmia may be due to a disturbance in impulse formation or conduction or both." [DDD:dbrown, pmid:19063792]
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 HP:0011710 Bundle branch block "Block of conduction of electrical impulses along the Bundle of His or along one of its bundle branches." [DDD:dbrown, HPO:probinson]
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 HP:0012251 ST segment elevation "An electrocardiographic anomaly in which the ST segment is observed to be located superior to the isoelectric line." [HPO:probinson]
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 HP:0012758 Neurodevelopmental delay 
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 HP:0025356 Pschomotor retardation 
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 HP:0200134 Epileptic encephalopathy 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000145362 ANK2 / Q01484 / ankyrin 2  / reaction / complex
 ENSG00000029534 ANK1 / P16157 / ankyrin 1  / reaction / complex
 ENSG00000183873 SCN5A / Q14524 / sodium voltage-gated channel alpha subunit 5  / complex
 ENSG00000163531 NFASC / O94856 / neurofascin  / complex / reaction
 ENSG00000184009 ACTG1 / P63261 / actin gamma 1  / complex / reaction
 ENSG00000075624 ACTB / P60709 / actin beta  / reaction / complex
 ENSG00000197694 Q13813 / SPTAN1 / spectrin alpha, non-erythrocytic 1  / complex / reaction
 ENSG00000091129 NRCAM / Q92823 / neuronal cell adhesion molecule  / reaction / complex
 ENSG00000163554 SPTA1 / P02549 / spectrin alpha, erythrocytic 1  / complex / reaction






 

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