ENSG00000197694


Homo sapiens

Features
Gene ID: ENSG00000197694
  
Biological name :SPTAN1
  
Synonyms : Q13813 / spectrin alpha, non-erythrocytic 1 / SPTAN1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: 1
Band: q34.11
Gene start: 128552558
Gene end: 128633662
  
Corresponding Affymetrix probe sets: 208611_s_at (Human Genome U133 Plus 2.0 Array)   214925_s_at (Human Genome U133 Plus 2.0 Array)   214926_at (Human Genome U133 Plus 2.0 Array)   215235_at (Human Genome U133 Plus 2.0 Array)   241150_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000486308
Ensembl peptide - ENSP00000361824
Ensembl peptide - ENSP00000486547
Ensembl peptide - ENSP00000490890
Ensembl peptide - ENSP00000490740
Ensembl peptide - ENSP00000490332
Ensembl peptide - ENSP00000490229
Ensembl peptide - ENSP00000490179
Ensembl peptide - ENSP00000490109
Ensembl peptide - ENSP00000489647
Ensembl peptide - ENSP00000489629
Ensembl peptide - ENSP00000487444
Ensembl peptide - ENSP00000486605
Ensembl peptide - ENSP00000350882
Ensembl peptide - ENSP00000361816
NCBI entrez gene - 6709     See in Manteia.
OMIM - 182810
RefSeq - XM_017015061
RefSeq - NM_001130438
RefSeq - NM_001195532
RefSeq - NM_003127
RefSeq - XM_006717245
RefSeq - XM_006717246
RefSeq - XM_006717247
RefSeq - XM_006717248
RefSeq - XM_006717249
RefSeq - XM_006717250
RefSeq - XM_006717251
RefSeq - XM_006717252
RefSeq - XM_006717253
RefSeq - XM_006717254
RefSeq - XM_017015059
RefSeq - XM_017015060
RefSeq Peptide - NP_003118
RefSeq Peptide - NP_001123910
RefSeq Peptide - NP_001182461
swissprot - A0A1B0GUN2
swissprot - A0A1B0GUH3
swissprot - A0A1B0GTD1
swissprot - A0A1B0GTB7
swissprot - A0A1B0GWE2
swissprot - A0A0D9SFH4
swissprot - A0A0D9SFF6
swissprot - Q13813
swissprot - A0A0D9SF54
swissprot - A0A0D9SGF6
swissprot - A0A1B0GW19
swissprot - A0A1B0GV13
Ensembl - ENSG00000197694
  
Related genetic diseases (OMIM): 613477 - Epileptic encephalopathy, early infantile, 5, 613477
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sptan1ENSDARG00000019231Danio rerio
 SPTAN1ENSGALG00000004719Gallus gallus
 P16546ENSMUSG00000057738Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SPTA1 / P02549 / spectrin alpha, erythrocytic 1ENSG0000016355455
Q01082 / SPTBN1 / spectrin beta, non-erythrocytic 1ENSG0000011530622
SPTB / P11277 / spectrin beta, erythrocyticENSG0000007018221
O15020 / SPTBN2 / spectrin beta, non-erythrocytic 2ENSG0000017389821
Q9NRC6 / SPTBN5 / spectrin beta, non-erythrocytic 5ENSG0000013787719
Q9H254 / SPTBN4 / spectrin beta, non-erythrocytic 4ENSG0000016046018
ACTN1 / P12814 / actinin alpha 1ENSG000000721107
ACTN4 / O43707 / actinin alpha 4ENSG000001304027
ACTN2 / P35609 / actinin alpha 2ENSG000000775227
ACTN3 / Q08043 / actinin alpha 3 (gene/pseudogene)ENSG000002487466


Protein motifs (from Interpro)
Interpro ID Name
 IPR001452  SH3 domain
 IPR002017  Spectrin repeat
 IPR002048  EF-hand domain
 IPR011992  EF-hand domain pair
 IPR014837  EF-hand, Ca insensitive
 IPR018159  Spectrin/alpha-actinin
 IPR018247  EF-Hand 1, calcium-binding site
 IPR035825  Alpha Spectrin, SH3 domain
 IPR036028  SH3-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000165 MAPK cascade TAS
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport TAS
 biological_processGO:0007010 cytoskeleton organization IEA
 biological_processGO:0007411 axon guidance TAS
 biological_processGO:0043312 neutrophil degranulation TAS
 biological_processGO:0051693 actin filament capping IEA
 biological_processGO:0065009 regulation of molecular function IEA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005938 cell cortex IEA
 cellular_componentGO:0008091 spectrin TAS
 cellular_componentGO:0015630 microtubule cytoskeleton IDA
 cellular_componentGO:0016020 membrane TAS
 cellular_componentGO:0035580 specific granule lumen TAS
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 cellular_componentGO:1903561 extracellular vesicle HDA
 cellular_componentGO:1904724 tertiary granule lumen TAS
 molecular_functionGO:0003779 actin binding TAS
 molecular_functionGO:0005088 Ras guanyl-nucleotide exchange factor activity TAS
 molecular_functionGO:0005200 structural constituent of cytoskeleton TAS
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0005516 calmodulin binding IEA
 molecular_functionGO:0045296 cadherin binding IDA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Caspase-mediated cleavage of cytoskeletal proteins
Nephrin family interactions
NCAM signaling for neurite out-growth
Interaction between L1 and Ankyrins
RAF/MAP kinase cascade
Neutrophil degranulation
COPI-mediated anterograde transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000253 Microcephaly, progressive "Progressive microcephaly is diagnosed when the head circumference falls progressively behind age- and gender-dependent norms." [HPO:curators]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001272 Cerebellar atrophy 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0002059 Cerebral atrophy 
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002187 Mental retardation, profound "Severe mental retardation is defined as an intelligence quotient (IQ) below 20." [HPO:curators]
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 HP:0002376 Developmental regression 
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 HP:0002510 Spastic tetraplegia "Spastic paralysis affecting all four limbs." [HPO:curators]
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 HP:0002521 Hypsarrhythmia "Hypsarrhythmia is abnormal interictal high amplitude waves and a background of irregular spikes demonstrated by electroencephalography (EEG)." [HPO:curators]
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 HP:0003429 Hypomyelination 
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 HP:0003593 Early onset 
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 HP:0003828 Variable expressivity 
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 HP:0007366 Atrophy/Degeneration affecting the brainstem 
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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 HP:0011121 Abnormality of skin morphology "Any morphological abnormality of the `skin` (FMA:7163)." [HPO:probinson]
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 HP:0012469 Infantile spasms "Infantile spasms represent a subset of "epileptic spasms". Infantile Spasms are epileptic spasms starting in the first year of life (infancy)." [HPO:ihelbig]
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 HP:0200134 Epileptic encephalopathy 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000010810 FYN / P06241 / FYN proto-oncogene, Src family tyrosine kinase  / complex / reaction
 ENSG00000145362 ANK2 / Q01484 / ankyrin 2  / reaction / complex
 ENSG00000029534 ANK1 / P16157 / ankyrin 1  / reaction / complex
 ENSG00000164305 CASP3 / P42574 / caspase 3  / reaction
 ENSG00000163531 NFASC / O94856 / neurofascin  / complex
 ENSG00000149294 NCAM1 / P13591 / neural cell adhesion molecule 1  / reaction / complex
 ENSG00000184009 ACTG1 / P63261 / actin gamma 1  / complex
 ENSG00000075624 ACTB / P60709 / actin beta  / complex
 ENSG00000198910 L1CAM / P32004 / L1 cell adhesion molecule  / complex / reaction
 ENSG00000183873 SCN5A / Q14524 / sodium voltage-gated channel alpha subunit 5  / reaction / complex
 ENSG00000115904 SOS1 / Q07889 / SOS Ras/Rac guanine nucleotide exchange factor 1  / reaction / complex
 ENSG00000105711 SCN1B / Q07699 / sodium voltage-gated channel beta subunit 1  / complex / reaction
 ENSG00000197694 Q13813 / SPTAN1 / spectrin alpha, non-erythrocytic 1  / complex
 ENSG00000132670 PTPRA / P18433 / protein tyrosine phosphatase, receptor type A  / reaction / complex
 ENSG00000177885 GRB2 / P62993 / growth factor receptor bound protein 2  / reaction / complex
 ENSG00000075043 KCNQ2 / O43526 / potassium voltage-gated channel subfamily Q member 2  / reaction / complex
 ENSG00000184156 KCNQ3 / O43525 / potassium voltage-gated channel subfamily Q member 3  / complex / reaction
 ENSG00000169398 PTK2 / Q05397 / protein tyrosine kinase 2  / complex / reaction
 ENSG00000161270 NPHS1 / O60500 / NPHS1, nephrin  / complex / reaction
 ENSG00000091129 NRCAM / Q92823 / neuronal cell adhesion molecule  / complex
 ENSG00000183853 Q96J84 / KIRREL1 / kirre like nephrin family adhesion molecule 1  / complex / reaction
 ENSG00000197122 SRC / P12931 / SRC proto-oncogene, non-receptor tyrosine kinase  / reaction
 ENSG00000163554 SPTA1 / P02549 / spectrin alpha, erythrocytic 1  / complex






 

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