ENSGALG00000004719


Gallus gallus

Features
Gene ID: ENSGALG00000004719
  
Biological name :SPTAN1
  
Synonyms : spectrin alpha chain, non-erythrocytic 1 / SPTAN1
  
Possible biological names infered from orthology : P16546 / Q13813 / spectrin alpha, non-erythrocytic 1
  
Species: Gallus gallus
  
Chr. number: 17
Strand: 1
Band:
Gene start: 5677492
Gene end: 5723340
  
Corresponding Affymetrix probe sets: Gga.11413.1.S1_s_at (Chicken Array)   Gga.4441.1.S1_at (Chicken Array)   GgaAffx.21304.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000055085
Ensembl peptide - ENSGALP00000056929
Ensembl peptide - ENSGALP00000038979
NCBI entrez gene - 374234     See in Manteia.
RefSeq - XM_015279294
RefSeq - XM_015279290
RefSeq - XM_015279291
RefSeq - XM_015279292
RefSeq - XM_015279293
RefSeq - NM_001042538
RefSeq - XM_015279282
RefSeq - XM_015279283
RefSeq - XM_015279284
RefSeq - XM_015279285
RefSeq - XM_015279286
RefSeq - XM_015279287
RefSeq - XM_015279288
RefSeq - XM_015279289
RefSeq Peptide - NP_001036003
swissprot - A0A1D5PVG1
swissprot - F1NHT3
swissprot - A0A1D5PQC3
Ensembl - ENSGALG00000004719
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sptan1ENSDARG00000019231Danio rerio
 Q13813ENSG00000197694Homo sapiens
 P16546ENSMUSG00000057738Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SPTBN1 / spectrin beta, non-erythrocytic 1 / Q01082* / Q62261* / Spectrin beta chain, non-erythrocytic 1 *ENSGALG0000002951222
SPTBN5 / spectrin beta, non-erythrocytic 5 / Q9NRC6*ENSGALG0000000894020
SPTB / spectrin beta, erythrocytic / P11277*ENSGALG0000003680519
ACTN1 / P05094 / Alpha-actinin-1 / P12814* / Q7TPR4* / actinin alpha 1* / Mus musculus actinin, alpha 1 (Actn1), transcript variant 2, mRNA.*ENSGALG000000424587
ACTN2 / P20111 / Alpha-actinin-2 / P35609* / Q9JI91* / actinin alpha 2*ENSGALG000000144637


Protein motifs (from Interpro)
Interpro ID Name
 IPR001452  SH3 domain
 IPR002017  Spectrin repeat
 IPR002048  EF-hand domain
 IPR011992  EF-hand domain pair
 IPR014837  EF-hand, Ca insensitive
 IPR018159  Spectrin/alpha-actinin
 IPR018247  EF-Hand 1, calcium-binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0015630 microtubule cytoskeleton IEA
 cellular_componentGO:0043034 costamere IDA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0045296 cadherin binding IEA


Pathways (from Reactome)
Pathway description
Caspase-mediated cleavage of cytoskeletal proteins
NCAM signaling for neurite out-growth
RAF/MAP kinase cascade
Neutrophil degranulation
COPI-mediated anterograde transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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