ENSGALG00000029512


Gallus gallus

Features
Gene ID: ENSGALG00000029512
  
Biological name :SPTBN1
  
Synonyms : spectrin beta, non-erythrocytic 1 / SPTBN1
  
Possible biological names infered from orthology : Q01082 / Q62261 / Spectrin beta chain, non-erythrocytic 1
  
Species: Gallus gallus
  
Chr. number: 3
Strand: -1
Band:
Gene start: 2696497
Gene end: 2786404
  
Corresponding Affymetrix probe sets: Gga.9226.1.S1_at (Chicken Array)   Gga.9659.1.S1_s_at (Chicken Array)   GgaAffx.22491.2.S1_s_at (Chicken Array)   GgaAffx.22491.4.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000044155
Ensembl peptide - ENSGALP00000059905
Ensembl peptide - ENSGALP00000053130
Ensembl peptide - ENSGALP00000048584
NCBI entrez gene - 421216     See in Manteia.
RefSeq - XM_015283353
RefSeq - NM_001199425
RefSeq - XM_015283350
RefSeq - XM_015283351
RefSeq Peptide - NP_001186354
swissprot - A0A1L1RMB7
swissprot - A0A1D5PJY1
swissprot - A0A1D5P797
swissprot - A0A1D5NUY5
Ensembl - ENSGALG00000029512
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 si:zfos-1837d3.1ENSDARG00000105428Danio rerio
 sptbn1ENSDARG00000102883Danio rerio
 Q01082ENSG00000115306Homo sapiens
 Q62261ENSMUSG00000020315Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SPTB / spectrin beta, erythrocytic / P11277*ENSGALG0000003680554
SPTBN5 / spectrin beta, non-erythrocytic 5 / Q9NRC6*ENSGALG0000000894029
SPTAN1 / spectrin alpha chain, non-erythrocytic 1 / P16546* / Q13813* / spectrin alpha, non-erythrocytic 1*ENSGALG0000000471923
ACTN1 / P05094 / Alpha-actinin-1 / P12814* / Q7TPR4* / actinin alpha 1* / Mus musculus actinin, alpha 1 (Actn1), transcript variant 2, mRNA.*ENSGALG0000004245812
ACTN2 / P20111 / Alpha-actinin-2 / P35609* / Q9JI91* / actinin alpha 2*ENSGALG0000001446311


Protein motifs (from Interpro)
Interpro ID Name
 IPR001589  Actinin-type actin-binding domain, conserved site
 IPR001605  Pleckstrin homology domain, spectrin-type
 IPR001715  Calponin homology domain
 IPR001849  Pleckstrin homology domain
 IPR002017  Spectrin repeat
 IPR011993  PH-like domain superfamily
 IPR016343  Spectrin, beta subunit
 IPR018159  Spectrin/alpha-actinin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000281 mitotic cytokinesis IEA
 biological_processGO:0007009 plasma membrane organization IEA
 biological_processGO:0007010 cytoskeleton organization IEA
 biological_processGO:0007182 common-partner SMAD protein phosphorylation IEA
 biological_processGO:0043001 Golgi to plasma membrane protein transport IEA
 biological_processGO:0051693 actin filament capping IEA
 biological_processGO:0071709 membrane assembly IEA
 biological_processGO:0072659 protein localization to plasma membrane IEA
 biological_processGO:1900042 positive regulation of interleukin-2 secretion IEA
 biological_processGO:1903076 regulation of protein localization to plasma membrane IEA
 biological_processGO:1903078 positive regulation of protein localization to plasma membrane IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0008091 spectrin IEA
 cellular_componentGO:0014069 postsynaptic density IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030673 axolemma IEA
 cellular_componentGO:0030863 cortical cytoskeleton IEA
 cellular_componentGO:0031430 M band IEA
 cellular_componentGO:0032437 cuticular plate IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0005200 structural constituent of cytoskeleton IEA
 molecular_functionGO:0005543 phospholipid binding IEA
 molecular_functionGO:0030506 ankyrin binding IEA
 molecular_functionGO:0045296 cadherin binding IEA
 molecular_functionGO:0051020 GTPase binding IEA


Pathways (from Reactome)
Pathway description
NCAM signaling for neurite out-growth
RAF/MAP kinase cascade
COPI-mediated anterograde transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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