ENSDARG00000102883


Danio rerio

Features
Gene ID: ENSDARG00000102883
  
Biological name :sptbn1
  
Synonyms : spectrin, beta, non-erythrocytic 1 / sptbn1
  
Possible biological names infered from orthology : Q01082 / Q62261 / Spectrin beta chain, non-erythrocytic 1
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 43135198
Gene end: 43226255
  
Corresponding Affymetrix probe sets: Dr.3472.1.A1_at (Zebrafish Array)   Dr.3472.2.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000138563
Ensembl peptide - ENSDARP00000142454
swissprot - A0A0G2L1F5
swissprot - A0A140LGS5
ZFIN ID - ZDB-GENE-031006-3
Ensembl - ENSDARG00000102883
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SPTBN1ENSGALG00000029512Gallus gallus
 Q01082ENSG00000115306Homo sapiens
 Q62261ENSMUSG00000020315Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sptbn2 / spectrin, beta, non-erythrocytic 2 / O15020*ENSDARG0000005395667
sptb / spectrin, beta, erythrocytic / P11277*ENSDARG0000003049060
SPTBN4 / si:ch73-262h23.4 / Q9H254* / spectrin beta, non-erythrocytic 4*ENSDARG0000009262430
sptbn5 / spectrin, beta, non-erythrocytic 5 / Q9NRC6*ENSDARG0000009768328
sptan1 / spectrin alpha, non-erythrocytic 1 / SPTA1* / Q13813* / P08032* / P16546* / P02549* / spectrin alpha, erythrocytic 1* / Spectrin alpha chain, erythrocytic 1 * / Spectrin alpha chai...ENSDARG0000001923123
si:dkey-27p18.5 / Q9H254* / SPTBN4* / spectrin beta, non-erythrocytic 4*ENSDARG0000006862419
actn1 / actinin, alpha 1 / P12814* / Q7TPR4* / Mus musculus actinin, alpha 1 (Actn1), transcript variant 2, mRNA.*ENSDARG0000000721911
actn3b / actinin alpha 3b / ACTN3* / Q08043* / O88990* / Alpha-actinin-3 * / actinin alpha 3 (gene/pseudogene)*ENSDARG0000000143111
actn2b / actinin, alpha 2b / ACTN2* / P35609* / Q9JI91* / actinin alpha 2* / Alpha-actinin-2 *ENSDARG0000007109011
actn3a / actinin alpha 3a / ACTN3* / Q08043* / O88990* / Alpha-actinin-3 * / actinin alpha 3 (gene/pseudogene)*ENSDARG0000001375511
actn4 / actinin, alpha 4 / O43707*ENSDARG0000009978611
si:ch73-262h23.4 / Q9H254* / SPTBN4* / spectrin beta, non-erythrocytic 4*ENSDARG0000011194210
si:zfos-1837d3.1 / Q62261* / Q01082* / SPTBN1* / spectrin beta, non-erythrocytic 1* / Spectrin beta chain, non-erythrocytic 1 *ENSDARG000001054289


Protein motifs (from Interpro)
Interpro ID Name
 IPR001589  Actinin-type actin-binding domain, conserved site
 IPR001605  Pleckstrin homology domain, spectrin-type
 IPR001715  Calponin homology domain
 IPR001849  Pleckstrin homology domain
 IPR002017  Spectrin repeat
 IPR011993  PH-like domain superfamily
 IPR016343  Spectrin, beta subunit
 IPR018159  Spectrin/alpha-actinin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007010 cytoskeleton organization IEA
 biological_processGO:0051693 actin filament capping IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0008091 spectrin IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0005200 structural constituent of cytoskeleton IEA
 molecular_functionGO:0005543 phospholipid binding IEA


Pathways (from Reactome)
Pathway description
NCAM signaling for neurite out-growth
Interaction between L1 and Ankyrins
RAF/MAP kinase cascade
COPI-mediated anterograde transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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