ENSGALG00000008940


Gallus gallus

Features
Gene ID: ENSGALG00000008940
  
Biological name :SPTBN5
  
Synonyms : spectrin beta, non-erythrocytic 5 / SPTBN5
  
Possible biological names infered from orthology : Q9NRC6
  
Species: Gallus gallus
  
Chr. number: 5
Strand: -1
Band:
Gene start: 25199152
Gene end: 25289469
  
Corresponding Affymetrix probe sets: Gga.6162.1.S1_at (Chicken Array)   Gga.6162.1.S1_s_at (Chicken Array)   GgaAffx.22710.1.S1_at (Chicken Array)   GgaAffx.5630.1.S1_s_at (Chicken Array)   GgaAffx.5630.2.S1_s_at (Chicken Array)   GgaAffx.5630.6.S1_at (Chicken Array)   GgaAffx.5630.6.S1_s_at (Chicken Array)   GgaAffx.5630.8.S1_s_at (Chicken Array)   GgaAffx.5630.9.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000014517
NCBI entrez gene - 423225     See in Manteia.
RefSeq - XM_421149
swissprot - F1NV58
Ensembl - ENSGALG00000008940
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sptbn5ENSDARG00000097683Danio rerio
 Q9NRC6ENSG00000137877Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SPTBN1 / spectrin beta, non-erythrocytic 1 / Q01082* / Q62261* / Spectrin beta chain, non-erythrocytic 1 *ENSGALG0000002951218
SPTB / spectrin beta, erythrocytic / P11277*ENSGALG0000003680516
SPTAN1 / spectrin alpha chain, non-erythrocytic 1 / P16546* / Q13813* / spectrin alpha, non-erythrocytic 1*ENSGALG0000000471913
ACTN1 / P05094 / Alpha-actinin-1 / P12814* / Q7TPR4* / actinin alpha 1* / Mus musculus actinin, alpha 1 (Actn1), transcript variant 2, mRNA.*ENSGALG000000424587
ACTN2 / P20111 / Alpha-actinin-2 / P35609* / Q9JI91* / actinin alpha 2*ENSGALG000000144637


Protein motifs (from Interpro)
Interpro ID Name
 IPR001589  Actinin-type actin-binding domain, conserved site
 IPR001605  Pleckstrin homology domain, spectrin-type
 IPR001715  Calponin homology domain
 IPR001849  Pleckstrin homology domain
 IPR002017  Spectrin repeat
 IPR011993  PH-like domain superfamily
 IPR018159  Spectrin/alpha-actinin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007030 Golgi organization IEA
 biological_processGO:0007041 lysosomal transport IEA
 biological_processGO:0051260 protein homooligomerization IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0032391 photoreceptor connecting cilium IEA
 cellular_componentGO:0097381 photoreceptor disc membrane IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0005543 phospholipid binding IEA
 molecular_functionGO:0019894 kinesin binding IEA
 molecular_functionGO:0030507 spectrin binding IEA
 molecular_functionGO:0032029 myosin tail binding IEA
 molecular_functionGO:0034452 dynactin binding IEA
 molecular_functionGO:0043621 protein self-association IEA
 molecular_functionGO:0045505 dynein intermediate chain binding IEA


Pathways (from Reactome)
Pathway description
NCAM signaling for neurite out-growth
RAF/MAP kinase cascade
COPI-mediated anterograde transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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