ENSG00000130402


Homo sapiens

Features
Gene ID: ENSG00000130402
  
Biological name :ACTN4
  
Synonyms : actinin alpha 4 / ACTN4 / O43707
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: 1
Band: q13.2
Gene start: 38647649
Gene end: 38731583
  
Corresponding Affymetrix probe sets: 200601_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000465176
Ensembl peptide - ENSP00000439497
Ensembl peptide - ENSP00000467190
Ensembl peptide - ENSP00000252699
Ensembl peptide - ENSP00000398393
Ensembl peptide - ENSP00000411187
NCBI entrez gene - 81     See in Manteia.
OMIM - 604638
RefSeq - XM_017027331
RefSeq - NM_001322033
RefSeq - NM_004924
RefSeq - XM_005259281
RefSeq - XM_006723406
RefSeq Peptide - NP_001308962
RefSeq Peptide - NP_004915
swissprot - F5GXS2
swissprot - H7C144
swissprot - K7EJH8
swissprot - O43707
swissprot - K7EP19
swissprot - A0A0S2Z3G9
Ensembl - ENSG00000130402
  
Related genetic diseases (OMIM): 603278 - Glomerulosclerosis, focal segmental, 1, 603278
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 actn4ENSDARG00000099786Danio rerio
 Actn4ENSMUSG00000054808Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ACTN1 / P12814 / actinin alpha 1ENSG0000007211084
ACTN2 / P35609 / actinin alpha 2ENSG0000007752276
ACTN3 / Q08043 / actinin alpha 3 (gene/pseudogene)ENSG0000024874670
Q9NRC6 / SPTBN5 / spectrin beta, non-erythrocytic 5ENSG0000013787732
Q01082 / SPTBN1 / spectrin beta, non-erythrocytic 1ENSG0000011530631
O15020 / SPTBN2 / spectrin beta, non-erythrocytic 2ENSG0000017389829
SPTB / P11277 / spectrin beta, erythrocyticENSG0000007018229
Q9H254 / SPTBN4 / spectrin beta, non-erythrocytic 4ENSG0000016046028
Q13813 / SPTAN1 / spectrin alpha, non-erythrocytic 1ENSG0000019769419
SPTA1 / P02549 / spectrin alpha, erythrocytic 1ENSG0000016355416


Protein motifs (from Interpro)
Interpro ID Name
 IPR001589  Actinin-type actin-binding domain, conserved site
 IPR001715  Calponin homology domain
 IPR002017  Spectrin repeat
 IPR002048  EF-hand domain
 IPR011992  EF-hand domain pair
 IPR014837  EF-hand, Ca insensitive
 IPR018159  Spectrin/alpha-actinin
 IPR018247  EF-Hand 1, calcium-binding site
 IPR029637  Alpha-actinin-4
 IPR036872  CH domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001666 response to hypoxia IEA
 biological_processGO:0002576 platelet degranulation TAS
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0030050 vesicle transport along actin filament IMP
 biological_processGO:0030335 positive regulation of cell migration IMP
 biological_processGO:0032417 positive regulation of sodium:proton antiporter activity NAS
 biological_processGO:0035357 peroxisome proliferator activated receptor signaling pathway IDA
 biological_processGO:0042981 regulation of apoptotic process NAS
 biological_processGO:0048384 retinoic acid receptor signaling pathway IDA
 biological_processGO:0048549 positive regulation of pinocytosis IEA
 biological_processGO:0051017 actin filament bundle assembly IEA
 biological_processGO:0051271 negative regulation of cellular component movement IEA
 biological_processGO:0051272 positive regulation of cellular component movement IMP
 biological_processGO:0070830 bicellular tight junction assembly IEA
 biological_processGO:1900025 negative regulation of substrate adhesion-dependent cell spreading IMP
 biological_processGO:1901224 positive regulation of NIK/NF-kappaB signaling IMP
 biological_processGO:1902396 protein localization to bicellular tight junction IEA
 biological_processGO:1903506 regulation of nucleic acid-templated transcription IMP
 cellular_componentGO:0001725 stress fiber IEA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005615 extracellular space HDA
 cellular_componentGO:0005622 intracellular IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005903 brush border IEA
 cellular_componentGO:0005911 cell-cell junction IEA
 cellular_componentGO:0005925 focal adhesion HDA
 cellular_componentGO:0015629 actin cytoskeleton IDA
 cellular_componentGO:0016604 nuclear body IDA
 cellular_componentGO:0030018 Z disc IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030863 cortical cytoskeleton IEA
 cellular_componentGO:0031093 platelet alpha granule lumen TAS
 cellular_componentGO:0031143 pseudopodium TAS
 cellular_componentGO:0032991 protein-containing complex IDA
 cellular_componentGO:0043005 neuron projection IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IDA
 molecular_functionGO:0001882 nucleoside binding IDA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0003779 actin binding TAS
 molecular_functionGO:0005178 integrin binding TAS
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0030374 nuclear receptor transcription coactivator activity IMP
 molecular_functionGO:0031490 chromatin DNA binding IDA
 molecular_functionGO:0035257 nuclear hormone receptor binding IPI
 molecular_functionGO:0042803 protein homodimerization activity TAS
 molecular_functionGO:0042974 retinoic acid receptor binding IPI
 molecular_functionGO:0044325 ion channel binding IPI
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0047485 protein N-terminus binding IEA
 molecular_functionGO:0051015 actin filament binding IMP


Pathways (from Reactome)
Pathway description
Platelet degranulation
Nephrin family interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000093 Proteinuria 
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 HP:0000097 Focal segmental glomerulosclerosis 
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0000969 Edema "An abnormal accumulation of fluid beneath the skin, or in one or more cavities of the body. Edema may be related to one or more of the following factors: 1) increased capillary hydrostatic pressure, 2) decreased osmotic pressure of plasma, 3) decreased tissue tension and lymphatic drainage, 4) increased osmotic pressure of tissue fluids, and 5) increased capillary permeability." [HPO:curators]
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 HP:0001903 Anemia 
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 HP:0003073 Hypoalbuminemia "Reduction in the concentration of albumin in the blood." [HPO:curators]
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 HP:0003077 Hyperlipidemia 
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 HP:0003677 Slow progression 
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 HP:0003774 End stage renal disease 
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 HP:0003828 Variable expressivity 
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 HP:0003829 Incomplete penetrance 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000161270 NPHS1 / O60500 / NPHS1, nephrin  / complex / reaction
 ENSG00000183853 Q96J84 / KIRREL1 / kirre like nephrin family adhesion molecule 1  / reaction / complex






 

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