ENSG00000173898


Homo sapiens

Features
Gene ID: ENSG00000173898
  
Biological name :SPTBN2
  
Synonyms : O15020 / spectrin beta, non-erythrocytic 2 / SPTBN2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: -1
Band: q13.2
Gene start: 66685248
Gene end: 66729226
  
Corresponding Affymetrix probe sets: 205155_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000433631
Ensembl peptide - ENSP00000433593
Ensembl peptide - ENSP00000480692
Ensembl peptide - ENSP00000482000
Ensembl peptide - ENSP00000311489
Ensembl peptide - ENSP00000432568
NCBI entrez gene - 6712     See in Manteia.
OMIM - 604985
RefSeq - XM_017018178
RefSeq - XM_017018174
RefSeq - XM_017018175
RefSeq - XM_017018176
RefSeq - XM_017018177
RefSeq - NM_006946
RefSeq - XM_005274192
RefSeq - XM_005274193
RefSeq - XM_006718669
RefSeq - XM_006718671
RefSeq Peptide - NP_008877
swissprot - E9PJZ2
swissprot - A4QPE4
swissprot - O15020
Ensembl - ENSG00000173898
  
Related genetic diseases (OMIM): 600224 - Spinocerebellar ataxia 5, 600224
  615386 - Spinocerebellar ataxia, autosomal recessive 14, 615386
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sptbn2ENSDARG00000053956Danio rerio
 Sptbn2ENSMUSG00000067889Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q01082 / SPTBN1 / spectrin beta, non-erythrocytic 1ENSG0000011530662
SPTB / P11277 / spectrin beta, erythrocyticENSG0000007018252
Q9H254 / SPTBN4 / spectrin beta, non-erythrocytic 4ENSG0000016046047
Q9NRC6 / SPTBN5 / spectrin beta, non-erythrocytic 5ENSG0000013787729
Q13813 / SPTAN1 / spectrin alpha, non-erythrocytic 1ENSG0000019769422
SPTA1 / P02549 / spectrin alpha, erythrocytic 1ENSG0000016355420
ACTN2 / P35609 / actinin alpha 2ENSG0000007752211
ACTN1 / P12814 / actinin alpha 1ENSG0000007211011
ACTN4 / O43707 / actinin alpha 4ENSG0000013040211
ACTN3 / Q08043 / actinin alpha 3 (gene/pseudogene)ENSG0000024874611


Protein motifs (from Interpro)
Interpro ID Name
 IPR001589  Actinin-type actin-binding domain, conserved site
 IPR001605  Pleckstrin homology domain, spectrin-type
 IPR001715  Calponin homology domain
 IPR001849  Pleckstrin homology domain
 IPR002017  Spectrin repeat
 IPR011993  PH-like domain superfamily
 IPR016343  Spectrin, beta subunit
 IPR018159  Spectrin/alpha-actinin
 IPR036872  CH domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000165 MAPK cascade TAS
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport TAS
 biological_processGO:0007010 cytoskeleton organization IEA
 biological_processGO:0007411 axon guidance TAS
 biological_processGO:0007416 synapse assembly IEA
 biological_processGO:0016192 vesicle-mediated transport IDA
 biological_processGO:0019886 antigen processing and presentation of exogenous peptide antigen via MHC class II TAS
 biological_processGO:0021692 cerebellar Purkinje cell layer morphogenesis IEA
 biological_processGO:0030534 adult behavior IEA
 biological_processGO:0035264 multicellular organism growth IEA
 biological_processGO:0051693 actin filament capping IEA
 biological_processGO:0065009 regulation of molecular function IEA
 cellular_componentGO:0005615 extracellular space HDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005938 cell cortex IEA
 cellular_componentGO:0008091 spectrin IDA
 cellular_componentGO:0016324 apical plasma membrane IEA
 cellular_componentGO:0030054 cell junction IDA
 cellular_componentGO:0043025 neuronal cell body IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0005088 Ras guanyl-nucleotide exchange factor activity TAS
 molecular_functionGO:0005200 structural constituent of cytoskeleton TAS
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0005543 phospholipid binding IEA
 molecular_functionGO:0045296 cadherin binding IDA


Pathways (from Reactome)
Pathway description
MHC class II antigen presentation
NCAM signaling for neurite out-growth
Interaction between L1 and Ankyrins
RAF/MAP kinase cascade
COPI-mediated anterograde transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000317 Facial myokymia "Facial myokymia is a fine fibrillary activity of the facial muscles. Facial myokymia may be caused by a plaque of multiple sclerosis or have other causes." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000571 Hypometric saccades 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000640 Gaze-evoked nystagmus "Nystagmus made apparent by looking to the right or to the left." [HPO:curators]
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 HP:0000641 Dysmetric saccades 
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 HP:0000651 Diplopia "Diplopia is a condition in which a single object is perceived as two images, it is also known as double vision." [HPO:curators]
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 HP:0000666 Nystagmus, horizontal 
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 HP:0000750 Impaired language development 
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001272 Cerebellar atrophy 
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001310 Dysmetria 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001350 Slurred speech 
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 HP:0002066 Gait ataxia "Impairment of the ability to coordinate the movements required for normal walking." [HPO:curators]
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 HP:0002070 Limb ataxia 
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 HP:0002073 Progressive cerebellar ataxia 
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 HP:0002075 Dysdiadochokinesis "An inability to perform rapidly alternating movements, such as rhythmically tapping the fingers on the knee, generally related to a cerebellar lesion." [HPO:curators]
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 HP:0002078 Truncal ataxia 
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 HP:0002080 Intention tremor "An oscillatory cerebellar ataxia that tends to be absent when the limbs are inactive and during the first part of voluntary movement but worsening as the movement continues and greater precision is required (e.g., in touching a target such as the patient s nose or a physician s finger)." [HPO:curators]
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 HP:0002311 Incoordination 
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 HP:0002495 Impaired vibratory sense "A decrease in the ability to perceive vibration. Clinically, this is usually tested with a tuning fork which vibrates at 128 Hz and is applied to bony prominences such as the malleoli at the ankles or the metacarpal-phalangeal joints. There is a slow decay of vibration from the tuning fork. The degree of vibratory sense loss can be crudely estimated by counting the number of seconds that the examiner can perceive the vibration longer than the patient." [HPO:curators]
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 HP:0003593 Early onset 
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 HP:0003674 Age of onset 
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 HP:0003677 Slow progression 
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 HP:0007240 Progressive gait ataxia 
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 HP:0007772 Impaired smooth pursuit in adult patients 
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 HP:0008003 Jerky ocular pursuit movements 
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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