ENSG00000198910


Homo sapiens

Features
Gene ID: ENSG00000198910
  
Biological name :L1CAM
  
Synonyms : L1CAM / L1 cell adhesion molecule / P32004
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: -1
Band: q28
Gene start: 153861514
Gene end: 153886174
  
Corresponding Affymetrix probe sets: 204584_at (Human Genome U133 Plus 2.0 Array)   204585_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000359077
Ensembl peptide - ENSP00000384902
Ensembl peptide - ENSP00000402407
Ensembl peptide - ENSP00000397792
Ensembl peptide - ENSP00000396079
Ensembl peptide - ENSP00000392524
Ensembl peptide - ENSP00000354712
Ensembl peptide - ENSP00000355380
Ensembl peptide - ENSP00000359072
Ensembl peptide - ENSP00000359075
NCBI entrez gene - 3897     See in Manteia.
OMIM - 308840
RefSeq - NM_001278116
RefSeq - NM_024003
RefSeq - NM_000425
RefSeq - NM_001143963
RefSeq Peptide - NP_001265045
RefSeq Peptide - NP_076493
RefSeq Peptide - NP_000416
RefSeq Peptide - NP_001137435
swissprot - P32004
swissprot - E7EVM4
swissprot - E7EPI4
swissprot - E7EMY4
swissprot - H0Y5C3
swissprot - H3BLW5
swissprot - E9PHJ4
Ensembl - ENSG00000198910
  
Related genetic diseases (OMIM): 303350 - CRASH syndrome, 303350
  304100 - Corpus callosum, partial agenesis of, 304100
  307000 - Hydrocephalus due to aqueductal stenosis, 307000
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 l1camaENSDARG00000007149Danio rerio
 l1cambENSDARG00000015025Danio rerio
 L1camENSMUSG00000031391Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NRCAM / Q92823 / neuronal cell adhesion moleculeENSG0000009112939
CHL1 / O00533 / cell adhesion molecule L1 likeENSG0000013412137
NFASC / O94856 / neurofascinENSG0000016353135
CNTN3 / Q9P232 / contactin 3ENSG0000011380523
CNTN2 / Q02246 / contactin 2ENSG0000018414423
CNTN5 / O94779 / contactin 5ENSG0000014997223
CNTN1 / Q12860 / contactin 1ENSG0000001823622
CNTN4 / Q8IWV2 / contactin 4ENSG0000014461922
CNTN6 / Q9UQ52 / contactin 6ENSG0000013411521


Protein motifs (from Interpro)
Interpro ID Name
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR003961  Fibronectin type III
 IPR007110  Immunoglobulin-like domain
 IPR013098  Immunoglobulin I-set
 IPR013783  Immunoglobulin-like fold
 IPR026966  Neurofascin/L1/NrCAM, C-terminal domain
 IPR036116  Fibronectin type III superfamily
 IPR036179  Immunoglobulin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006935 chemotaxis TAS
 biological_processGO:0007155 cell adhesion NAS
 biological_processGO:0007160 cell-matrix adhesion IDA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007399 nervous system development TAS
 biological_processGO:0007411 axon guidance IDA
 biological_processGO:0016477 cell migration IDA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0031175 neuron projection development IDA
 biological_processGO:0045773 positive regulation of axon extension ISS
 biological_processGO:0050808 synapse organization IDA
 biological_processGO:0050900 leukocyte migration TAS
 biological_processGO:0061564 axon development IDA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005925 focal adhesion HDA
 cellular_componentGO:0009986 cell surface IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030424 axon IEA
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0030426 growth cone IEA
 cellular_componentGO:0031012 extracellular matrix IDA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0043025 neuronal cell body IDA
 cellular_componentGO:0044295 axonal growth cone ISS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019904 protein domain specific binding IDA


Pathways (from Reactome)
Pathway description
Basigin interactions
L1CAM interactions
Recycling pathway of L1
Interaction between L1 and Ankyrins
Signal transduction by L1


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000238 Hydrocephalus 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000280 Coarse facial features 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000750 Impaired language development 
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 HP:0001181 Adducted thumbs 
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 HP:0001188 Clenched hands 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001258 Spastic paraplegia 
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001331 Absent septum pellucidum "Absence of the septum pellucidum." [HPO:curators]
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 HP:0001338 Partial agenesis of the corpus callosum "A partial failure of the development of the corpus callosum." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001360 Holoprosencephaly "Holoprosencephaly is a structural anomaly of the brain in which the developing forebrain fails to divide into two separate hemispheres and ventricles." [gc:hpe]
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001417 X-linked inheritance "A mode of inheritance that is observed for traits related to a gene encoded on the X chromosome." [HPO:curators]
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 HP:0001419 X-linked recessive inheritance "A mode of inheritance that is observed for recessive traits related to a gene encoded on the X chromosome. In the context of medical genetics, X-linked recessive disorders manifest in males (who have one copy of the X chromosome and are thus hemizygotes), but generally not in female heterozygotes who have one mutant and one normal allele." [HPO:curators]
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 HP:0001761 Pes cavus 
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0001999 Facial dysmorphism 
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 HP:0002119 Ventriculomegaly 
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 HP:0002251 Congenital megacolon "An abnormality resulting from a lack of intestinal ganglion cells (i.e., an aganglionic section of bowel) that results in bowel obstruction with enlargement of the colon." [HPO:curators]
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 HP:0002362 Shuffling gait 
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 HP:0002381 Aphasia 
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 HP:0002410 Aqueductal stenosis "Stenosis of the cerebral aqueduct (also known as the mesencephalic duct, aqueductus mesencephali, or aqueduct of Sylvius), which connects the third cerebral ventricle in the diencephalon to the fourth ventricle, which is between the pons and cerebellum." [HPO:curators]
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 HP:0002516 Increased intracranial pressure 
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 HP:0002808 Kyphosis 
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 HP:0003307 Hyperlordosis 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004374 Hemiplegia/hemiparesis "Loss of strength in the arm, leg, and sometimes face on one side of the body. Hemiplegia refers to a severe or complete loss of strength, whereas hemiparesis refers to a relatively mild loss of strength." [HPO:curators]
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 HP:0007016 Corticospinal tract hypoplasia 
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 HP:0007068 Inferior vermis hypoplasia 
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 HP:0009600 Joint contractures of the thumb "Chronic loss of joint motion in the thumb due to structural changes in non-bony tissue. The term camptodactyly is used if the distal and/or proximal interphalangeal joints are affected." [HPO:curators]
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000010017 Q96S59 / RANBP9 / RAN binding protein 9  / reaction / complex
 ENSG00000100030 MAPK1 / P28482 / mitogen-activated protein kinase 1  / reaction / complex
 ENSG00000101266 P68400 / CSNK2A1 / casein kinase 2 alpha 1  / reaction / complex
 ENSG00000091136 LAMB1 / P07942 / laminin subunit beta 1  / complex / reaction
 ENSG00000122705 CLTA / P09496 / clathrin light chain A  / complex / reaction
 ENSG00000130287 NCAN / O14594 / neurocan  / complex / reaction
 ENSG00000042753 AP2S1 / P53680 / adaptor related protein complex 2 sigma 1 subunit  / reaction / complex
 ENSG00000145362 ANK2 / Q01484 / ankyrin 2  / complex / reaction
 ENSG00000070770 P19784 / CSNK2A2 / casein kinase 2 alpha 2  / reaction / complex
 ENSG00000135862 LAMC1 / P11047 / laminin subunit gamma 1  / reaction / complex
 ENSG00000099250 NRP1 / O14786 / neuropilin 1  / complex / reaction
 ENSG00000029534 ANK1 / P16157 / ankyrin 1  / reaction / complex
 ENSG00000146648 EGFR / P00533 / epidermal growth factor receptor  / reaction / complex
 ENSG00000092964 DPYSL2 / Q16555 / dihydropyrimidinase like 2  / reaction / complex
 ENSG00000170017 ALCAM / Q13740 / activated leukocyte cell adhesion molecule  / complex / reaction
 ENSG00000161203 AP2M1 / Q96CW1 / adaptor related protein complex 2 mu 1 subunit  / reaction / complex
 ENSG00000141367 CLTC / Q00610 / clathrin heavy chain  / complex / reaction
 ENSG00000077782 FGFR1 / P11362 / fibroblast growth factor receptor 1  / complex / reaction
 ENSG00000149294 NCAM1 / P13591 / neural cell adhesion molecule 1  / complex / reaction
 ENSG00000183020 AP2A2 / O94973 / adaptor related protein complex 2 alpha 2 subunit  / complex / reaction
 ENSG00000092820 EZR / ezrin / P15311  / complex / reaction
 ENSG00000184009 ACTG1 / P63261 / actin gamma 1  / reaction / complex
 ENSG00000184144 CNTN2 / Q02246 / contactin 2  / complex / reaction
 ENSG00000075624 ACTB / P60709 / actin beta  / complex / reaction
 ENSG00000018236 CNTN1 / Q12860 / contactin 1  / reaction / complex
 ENSG00000197694 Q13813 / SPTAN1 / spectrin alpha, non-erythrocytic 1  / reaction / complex
 ENSG00000187164 SHTN1 / A0MZ66 / shootin 1  / complex / reaction
 ENSG00000198910 L1CAM / P32004 / L1 cell adhesion molecule  / complex / reaction
 ENSG00000163554 SPTA1 / P02549 / spectrin alpha, erythrocytic 1  / reaction / complex
 ENSG00000133216 EPHB2 / P29323 / EPH receptor B2  / complex / reaction
 ENSG00000172270 BSG / P35613 / basigin (Ok blood group)  / complex / reaction
 ENSG00000006125 AP2B1 / P63010 / adaptor related protein complex 2 beta 1 subunit  / complex / reaction
 ENSG00000107295 Q99962 / SH3GL2 / SH3 domain containing GRB2 like 2, endophilin A1  / complex / reaction
 ENSG00000204435 CSNK2B / P67870 / casein kinase 2 beta  / complex / reaction
 ENSG00000196961 AP2A1 / O95782 / adaptor related protein complex 2 alpha 1 subunit  / complex / reaction
 ENSG00000133961 NUMB / P49757 / NUMB, endocytic adaptor protein  / complex / reaction
 ENSG00000197122 SRC / P12931 / SRC proto-oncogene, non-receptor tyrosine kinase  / reaction
 ENSG00000090889 KIF4A / O95239 / kinesin family member 4A  / complex / reaction
 ENSG00000101680 LAMA1 / P25391 / laminin subunit alpha 1  / complex / reaction
 ENSG00000226650 KIF4B / Q2VIQ3 / kinesin family member 4B  / reaction / complex






 

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