ENSDARG00000015025


Danio rerio

Features
Gene ID: ENSDARG00000015025
  
Biological name :l1camb
  
Synonyms : l1camb / L1 cell adhesion molecule, paralog b
  
Possible biological names infered from orthology : L1CAM / L1 cell adhesion molecule / P32004
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 597082
Gene end: 637347
  
Corresponding Affymetrix probe sets: Dr.442.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000121175
swissprot - F1R5A9
ZFIN ID - ZDB-GENE-980526-512
Ensembl - ENSDARG00000015025
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 L1CAMENSG00000198910Homo sapiens
 L1camENSMUSG00000031391Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
l1cama / L1 cell adhesion molecule, paralog a / L1CAM* / P32004* / L1 cell adhesion molecule*ENSDARG0000000714946
nrcama / neuronal cell adhesion molecule a / NRCAM* / Q810U4* / Q92823* / neuronal cell adhesion molecule*ENSDARG0000000639633
chl1b / cell adhesion molecule L1-like b / CHL1* / P70232* / O00533* / cell adhesion molecule L1 like* / Neural cell adhesion molecule L1-like protein Processed neural cell adhesion molecul...ENSDARG0000010310932
chl1a / cell adhesion molecule L1-like a / CHL1* / P70232* / O00533* / cell adhesion molecule L1 like* / Neural cell adhesion molecule L1-like protein Processed neural cell adhesion molecul...ENSDARG0000007788131
nfasca / neurofascin homolog (chicken) a / NFASC* / O94856* / Q810U3* / neurofascin*ENSDARG0000006109931
cntn3a.1 / contactin 3a, tandem duplicate 1 / CNTN4* / Q8IWV2* / Q69Z26* / contactin 4*ENSDARG0000006288019
cntn4 / contactin 4 / Q69Z26* / Q8IWV2*ENSDARG0000009816119
cntn3b / contactin 3b / CNTN3* / Q9P232* / contactin 3*ENSDARG0000005345419
cntn2 / contactin 2 / Q02246* / Q61330*ENSDARG0000000047218
cntn3a.2 / contactin 3a, tandem duplicate 2 / CNTN3* / Q07409* / Q9P232* / contactin 3*ENSDARG0000001364718
cntn5 / contactin 5 / O94779* / P68500*ENSDARG0000002158418
cntn1b / contactin 1b / CNTN1* / P12960* / Q12860* / contactin 1* / Mus musculus contactin 1 (Cntn1), transcript variant 4, mRNA.*ENSDARG0000004568517
cntn1a / contactin 1a / CNTN1* / Q12860* / contactin 1*ENSDARG0000008784312
CU234171.1 / NFASC* / O94856* / neurofascin*ENSDARG000000569108
BX942846.1 / CNTN6* / Q9JMB8* / Q9UQ52* / contactin 6*ENSDARG000001042778
LO017951.1 / CNTN6* / Q9UQ52* / contactin 6*ENSDARG000001127677


Protein motifs (from Interpro)
Interpro ID Name
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR003961  Fibronectin type III
 IPR007110  Immunoglobulin-like domain
 IPR013098  Immunoglobulin I-set
 IPR013151  Immunoglobulin
 IPR013783  Immunoglobulin-like fold
 IPR026966  Neurofascin/L1/NrCAM, C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
Basigin interactions
L1CAM interactions
Recycling pathway of L1
Interaction between L1 and Ankyrins
Signal transduction by L1


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000543 medial longitudinal fasciculus medial longitudinal fasciculus defasciculated , abnormal
Show

 ZFA:0000692 symplectic symplectic absent , abnormal
Show

 ZFA:0001205 Meckel s cartilage Meckels cartilage fused with palatoquadrate cartilage , abnormal
Show

 ZFA:0001400 ceratohyal cartilage ceratohyal cartilage bent , abnormal
Show

 ZFA:0001422 hyosymplectic cartilage hyosymplectic cartilage malformed , abnormal
Show

 ZFA:0001511 interhyal cartilage interhyal cartilage fused with ceratohyal cartilage , abnormal
interhyal cartilage fused with hyosymplectic cartilage , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr