ENSDARG00000021584


Danio rerio

Features
Gene ID: ENSDARG00000021584
  
Biological name :cntn5
  
Synonyms : cntn5 / contactin 5
  
Possible biological names infered from orthology : O94779 / P68500
  
Species: Danio rerio
  
Chr. number: 18
Strand: -1
Band:
Gene start: 42150947
Gene end: 42395161
  
Corresponding Affymetrix probe sets: Dr.21041.1.S1_at (Zebrafish Array)   NM_199804_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000089412
Ensembl peptide - ENSDARP00000089410
Ensembl peptide - ENSDARP00000107091
Ensembl peptide - ENSDARP00000038528
NCBI entrez gene - 327429     See in Manteia.
RefSeq - NM_199804
RefSeq Peptide - NP_956098
swissprot - F1QIL9
swissprot - F1QIL8
swissprot - F1QUR1
swissprot - F6P406
ZFIN ID - ZDB-GENE-030131-5640
Ensembl - ENSDARG00000021584
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CNTN5ENSGALG00000017197Gallus gallus
 CNTN5ENSG00000149972Homo sapiens
 Cntn5ENSMUSG00000039488Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cntn3b / contactin 3b / CNTN3* / Q9P232* / contactin 3*ENSDARG0000005345447
cntn4 / contactin 4 / Q69Z26* / Q8IWV2*ENSDARG0000009816147
cntn3a.1 / contactin 3a, tandem duplicate 1 / CNTN4* / Q8IWV2* / Q69Z26* / contactin 4*ENSDARG0000006288046
cntn3a.2 / contactin 3a, tandem duplicate 2 / CNTN3* / Q07409* / Q9P232* / contactin 3*ENSDARG0000001364743
cntn1b / contactin 1b / CNTN1* / P12960* / Q12860* / contactin 1* / Mus musculus contactin 1 (Cntn1), transcript variant 4, mRNA.*ENSDARG0000004568536
cntn2 / contactin 2 / Q02246* / Q61330*ENSDARG0000000047236
chl1a / cell adhesion molecule L1-like a / CHL1* / P70232* / O00533* / cell adhesion molecule L1 like* / Neural cell adhesion molecule L1-like protein Processed neural cell adhesion molecul...ENSDARG0000007788126
nrcama / neuronal cell adhesion molecule a / NRCAM* / Q810U4* / Q92823* / neuronal cell adhesion molecule*ENSDARG0000000639626
nfasca / neurofascin homolog (chicken) a / NFASC* / O94856* / Q810U3* / neurofascin*ENSDARG0000006109925
cntn1a / contactin 1a / CNTN1* / Q12860* / contactin 1*ENSDARG0000008784325
chl1b / cell adhesion molecule L1-like b / CHL1* / P70232* / O00533* / cell adhesion molecule L1 like* / Neural cell adhesion molecule L1-like protein Processed neural cell adhesion molecul...ENSDARG0000010310925
l1cama / L1 cell adhesion molecule, paralog a / L1CAM* / P32004* / L1 cell adhesion molecule*ENSDARG0000000714924
l1camb / L1 cell adhesion molecule, paralog b / L1CAM* / P32004* / L1 cell adhesion molecule*ENSDARG0000001502523
BX942846.1 / CNTN6* / Q9JMB8* / Q9UQ52* / contactin 6*ENSDARG0000010427719
LO017951.1 / CNTN6* / Q9UQ52* / contactin 6*ENSDARG0000011276718
CU234171.1 / NFASC* / O94856* / neurofascin*ENSDARG0000005691010


Protein motifs (from Interpro)
Interpro ID Name
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR003961  Fibronectin type III
 IPR007110  Immunoglobulin-like domain
 IPR013098  Immunoglobulin I-set
 IPR013783  Immunoglobulin-like fold
 IPR032991  Contactin-2


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr