ENSDARG00000007149


Danio rerio

Features
Gene ID: ENSDARG00000007149
  
Biological name :l1cama
  
Synonyms : l1cama / L1 cell adhesion molecule, paralog a
  
Possible biological names infered from orthology : L1CAM / L1 cell adhesion molecule / P32004
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 28582865
Gene end: 28681775
  
Corresponding Affymetrix probe sets: Dr.446.1.S1_at (Zebrafish Array)   NM_131361_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000005473
Ensembl peptide - ENSDARP00000154803
NCBI entrez gene - 30634     See in Manteia.
RefSeq - NM_131361
RefSeq Peptide - NP_571436
swissprot - F1R9X3
ZFIN ID - ZDB-GENE-990415-10
Ensembl - ENSDARG00000007149
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 L1CAMENSG00000198910Homo sapiens
 L1camENSMUSG00000031391Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
l1camb / L1 cell adhesion molecule, paralog b / L1CAM* / P32004* / L1 cell adhesion molecule*ENSDARG0000001502548
nrcama / neuronal cell adhesion molecule a / NRCAM* / Q810U4* / Q92823* / neuronal cell adhesion molecule*ENSDARG0000000639635
chl1b / cell adhesion molecule L1-like b / CHL1* / P70232* / O00533* / cell adhesion molecule L1 like* / Neural cell adhesion molecule L1-like protein Processed neural cell adhesion molecul...ENSDARG0000010310934
chl1a / cell adhesion molecule L1-like a / CHL1* / P70232* / O00533* / cell adhesion molecule L1 like* / Neural cell adhesion molecule L1-like protein Processed neural cell adhesion molecul...ENSDARG0000007788134
nfasca / neurofascin homolog (chicken) a / NFASC* / O94856* / Q810U3* / neurofascin*ENSDARG0000006109932
cntn4 / contactin 4 / Q69Z26* / Q8IWV2*ENSDARG0000009816121
cntn3b / contactin 3b / CNTN3* / Q9P232* / contactin 3*ENSDARG0000005345420
cntn5 / contactin 5 / O94779* / P68500*ENSDARG0000002158420
cntn3a.1 / contactin 3a, tandem duplicate 1 / CNTN4* / Q8IWV2* / Q69Z26* / contactin 4*ENSDARG0000006288020
cntn3a.2 / contactin 3a, tandem duplicate 2 / CNTN3* / Q07409* / Q9P232* / contactin 3*ENSDARG0000001364719
cntn2 / contactin 2 / Q02246* / Q61330*ENSDARG0000000047219
cntn1b / contactin 1b / CNTN1* / P12960* / Q12860* / contactin 1* / Mus musculus contactin 1 (Cntn1), transcript variant 4, mRNA.*ENSDARG0000004568518
cntn1a / contactin 1a / CNTN1* / Q12860* / contactin 1*ENSDARG0000008784313
CU234171.1 / NFASC* / O94856* / neurofascin*ENSDARG0000005691010
BX942846.1 / CNTN6* / Q9JMB8* / Q9UQ52* / contactin 6*ENSDARG000001042778
LO017951.1 / CNTN6* / Q9UQ52* / contactin 6*ENSDARG000001127677


Protein motifs (from Interpro)
Interpro ID Name
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR003961  Fibronectin type III
 IPR007110  Immunoglobulin-like domain
 IPR013151  Immunoglobulin
 IPR013783  Immunoglobulin-like fold
 IPR026966  Neurofascin/L1/NrCAM, C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
Basigin interactions
L1CAM interactions
Recycling pathway of L1
Interaction between L1 and Ankyrins
Signal transduction by L1


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000543 medial longitudinal fasciculus medial longitudinal fasciculus defasciculated , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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