ENSDARG00000045685


Danio rerio

Features
Gene ID: ENSDARG00000045685
  
Biological name :cntn1b
  
Synonyms : cntn1b / contactin 1b
  
Possible biological names infered from orthology : CNTN1 / contactin 1 / Mus musculus contactin 1 (Cntn1), transcript variant 4, mRNA. / P12960 / Q12860
  
Species: Danio rerio
  
Chr. number: 4
Strand: 1
Band:
Gene start: 13733838
Gene end: 13756716
  
Corresponding Affymetrix probe sets: Dr.16729.1.A1_at (Zebrafish Array)   NM_001014814_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000067165
Ensembl peptide - ENSDARP00000116014
NCBI entrez gene - 541474     See in Manteia.
RefSeq - NM_001014814
RefSeq Peptide - NP_001014814
swissprot - F1R1C8
swissprot - Q5TYT0
ZFIN ID - ZDB-GENE-041210-236
Ensembl - ENSDARG00000045685
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CNTN1ENSGALG00000009523Gallus gallus
 CNTN1ENSG00000018236Homo sapiens
 Cntn1ENSMUSG00000055022Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cntn2 / contactin 2 / Q02246* / Q61330*ENSDARG0000000047238
cntn5 / contactin 5 / O94779* / P68500*ENSDARG0000002158437
cntn3a.1 / contactin 3a, tandem duplicate 1 / CNTN4* / Q8IWV2* / Q69Z26* / contactin 4*ENSDARG0000006288036
cntn3b / contactin 3b / CNTN3* / Q9P232* / contactin 3*ENSDARG0000005345436
cntn4 / contactin 4 / Q69Z26* / Q8IWV2*ENSDARG0000009816136
cntn3a.2 / contactin 3a, tandem duplicate 2 / CNTN3* / Q07409* / Q9P232* / contactin 3*ENSDARG0000001364733
cntn1a / contactin 1a / CNTN1* / Q12860* / contactin 1*ENSDARG0000008784331
chl1a / cell adhesion molecule L1-like a / CHL1* / P70232* / O00533* / cell adhesion molecule L1 like* / Neural cell adhesion molecule L1-like protein Processed neural cell adhesion molecul...ENSDARG0000007788124
nfasca / neurofascin homolog (chicken) a / NFASC* / O94856* / Q810U3* / neurofascin*ENSDARG0000006109924
chl1b / cell adhesion molecule L1-like b / CHL1* / P70232* / O00533* / cell adhesion molecule L1 like* / Neural cell adhesion molecule L1-like protein Processed neural cell adhesion molecul...ENSDARG0000010310924
l1cama / L1 cell adhesion molecule, paralog a / L1CAM* / P32004* / L1 cell adhesion molecule*ENSDARG0000000714923
nrcama / neuronal cell adhesion molecule a / NRCAM* / Q810U4* / Q92823* / neuronal cell adhesion molecule*ENSDARG0000000639623
l1camb / L1 cell adhesion molecule, paralog b / L1CAM* / P32004* / L1 cell adhesion molecule*ENSDARG0000001502522
BX942846.1 / CNTN6* / Q9JMB8* / Q9UQ52* / contactin 6*ENSDARG0000010427715
LO017951.1 / CNTN6* / Q9UQ52* / contactin 6*ENSDARG0000011276713
CU234171.1 / NFASC* / O94856* / neurofascin*ENSDARG000000569108


Protein motifs (from Interpro)
Interpro ID Name
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR003961  Fibronectin type III
 IPR005479  Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain
 IPR007110  Immunoglobulin-like domain
 IPR013098  Immunoglobulin I-set
 IPR013783  Immunoglobulin-like fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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