ENSG00000018236


Homo sapiens

Features
Gene ID: ENSG00000018236
  
Biological name :CNTN1
  
Synonyms : CNTN1 / contactin 1 / Q12860
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: 1
Band: q12
Gene start: 40692442
Gene end: 41072418
  
Corresponding Affymetrix probe sets: 1554784_at (Human Genome U133 Plus 2.0 Array)   211203_s_at (Human Genome U133 Plus 2.0 Array)   227202_at (Human Genome U133 Plus 2.0 Array)   227209_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000449706
Ensembl peptide - ENSP00000449517
Ensembl peptide - ENSP00000450412
Ensembl peptide - ENSP00000261160
Ensembl peptide - ENSP00000325660
Ensembl peptide - ENSP00000447006
Ensembl peptide - ENSP00000447860
Ensembl peptide - ENSP00000447862
Ensembl peptide - ENSP00000448004
Ensembl peptide - ENSP00000448653
NCBI entrez gene - 1272     See in Manteia.
OMIM - 600016
RefSeq - XM_017018827
RefSeq - NM_175038
RefSeq - XM_005268651
RefSeq - XM_006719241
RefSeq - XM_011537926
RefSeq - XM_011537927
RefSeq - XM_017018821
RefSeq - XM_017018822
RefSeq - XM_017018823
RefSeq - XM_017018824
RefSeq - XM_017018825
RefSeq - XM_017018826
RefSeq - NM_001256063
RefSeq - NM_001256064
RefSeq - NM_001843
RefSeq Peptide - NP_001242993
RefSeq Peptide - NP_001834
RefSeq Peptide - NP_778203
RefSeq Peptide - NP_001242992
swissprot - H0YIJ1
swissprot - A0A024R104
swissprot - F8VQW3
swissprot - Q12860
swissprot - F8VUI8
swissprot - F8VUI9
swissprot - F8VX96
Ensembl - ENSG00000018236
  
Related genetic diseases (OMIM): 612540 - ?Myopathy, congenital, Compton-North, 612540
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cntn1aENSDARG00000087843Danio rerio
 cntn1bENSDARG00000045685Danio rerio
 CNTN1ENSGALG00000009523Gallus gallus
 Cntn1ENSMUSG00000055022Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CNTN2 / Q02246 / contactin 2ENSG0000018414450
CNTN5 / O94779 / contactin 5ENSG0000014997245
CNTN4 / Q8IWV2 / contactin 4ENSG0000014461944
CNTN3 / Q9P232 / contactin 3ENSG0000011380544
CNTN6 / Q9UQ52 / contactin 6ENSG0000013411541
L1CAM / P32004 / L1 cell adhesion moleculeENSG0000019891027
NRCAM / Q92823 / neuronal cell adhesion moleculeENSG0000009112926
CHL1 / O00533 / cell adhesion molecule L1 likeENSG0000013412126
NFASC / O94856 / neurofascinENSG0000016353125


Protein motifs (from Interpro)
Interpro ID Name
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR003961  Fibronectin type III
 IPR007110  Immunoglobulin-like domain
 IPR013098  Immunoglobulin I-set
 IPR013783  Immunoglobulin-like fold
 IPR036116  Fibronectin type III superfamily
 IPR036179  Immunoglobulin-like domain superfamily
 IPR036992  Contactin-1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion NAS
 biological_processGO:0007219 Notch signaling pathway IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0010628 positive regulation of gene expression IEA
 biological_processGO:0010765 positive regulation of sodium ion transport IEA
 biological_processGO:0010976 positive regulation of neuron projection development IEA
 biological_processGO:0021549 cerebellum development IEA
 biological_processGO:0031175 neuron projection development IEA
 biological_processGO:0050731 positive regulation of peptidyl-tyrosine phosphorylation IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane TAS
 cellular_componentGO:0031225 anchored component of membrane IEA
 cellular_componentGO:0043209 myelin sheath IEA
 cellular_componentGO:0045121 membrane raft IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0030246 carbohydrate binding IEA


Pathways (from Reactome)
Pathway description
Activated NOTCH1 Transmits Signal to the Nucleus
NOTCH2 Activation and Transmission of Signal to the Nucleus
L1CAM interactions
Neurofascin interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000268 Dolichocephaly 
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 HP:0000300 Oval face 
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 HP:0000316 Hypertelorism 
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 HP:0001166 Arachnodactyly "Abnormally long and slender fingers ("spider fingers")." [HPO:curators]
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 HP:0001284 Areflexia 
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 HP:0001319 Neonatal hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in the neonatal period." [HPO:curators]
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 HP:0001518 Low birth weight 
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 HP:0001522 Death in infancy 
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 HP:0001558 Decreased fetal movement "An abnormal reduction in quantity or strength of fetal movements." [HPO:curators]
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 HP:0001561 Polyhydramnios 
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 HP:0001989 Early severe fetal akinesia sequence 
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 HP:0002033 Poor suck "An inadequate sucking reflex, resulting in the difficult of newborns to be breast-fed." [HPO:curators]
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 HP:0002304 Akinesia 
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 HP:0002705 High, narrow palate "The presence of a high and narrow palate." [HPO:curators]
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 HP:0002747 Respiratory insufficiency due to muscle weakness 
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 HP:0009473 Joint contractures involving the joints of the hand 
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 HP:0010557 Overlapping fingers "Overlapping of the fingers occuring as the result of a deviation of the fingers from their normal position." [HPO:curators]
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 HP:0012385 Camptodactyly "The distal interphalangeal joint and/or the proximal interphalangeal joint of the fingers or toes cannot be extended to 180 degrees by either active or passive extension." [HPO:probinson]
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 HP:0030799 Scaphocephaly "Scaphocephaly is a subtype of dolichocephaly where the anterior and posterior aspects of the cranial vault are pointed (boat-shaped). Scaphocephaly is caused by a precocious fusion of sagittal suture without other associated synostosis." [HPO:probinson, PMID:16156241, PMID:23960302]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000163531 NFASC / O94856 / neurofascin  / reaction / complex
 ENSG00000198910 L1CAM / P32004 / L1 cell adhesion molecule  / reaction / complex
 ENSG00000148400 NOTCH1 / P46531  / complex / reaction
 ENSG00000135144 DTX1 / Q86Y01 / deltex E3 ubiquitin ligase 1  / complex / reaction
 ENSG00000134250 NOTCH2 / Q04721  / complex / reaction
 ENSG00000108797 P78357 / CNTNAP1 / contactin associated protein 1  / complex






 

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